(30 nodes) Synaptic vesicle localization network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-klc-2	CRE-KLC-2 protein. (559 aa)
	Cre-sng-1	CRE-SNG-1 protein. (278 aa)
	CRE_08658	Uncharacterized protein. (407 aa)
	CRE_08659	Uncharacterized protein. (400 aa)
	CRE_08660	Uncharacterized protein. (308 aa)
	CRE_08661	Uncharacterized protein. (393 aa)
	CRE_28094	ANK_REP_REGION domain-containing protein. (275 aa)
	Cre-lrk-1	CRE-LRK-1 protein. (2095 aa)
	Cre-unc-104	CRE-UNC-104 protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1633 aa)
	Cre-unc-16	CRE-UNC-16 protein. (1171 aa)
	Cre-unc-26	CRE-UNC-26 protein. (1121 aa)
	Cre-cdka-1	Cyclin-dependent kinase 5 activator. (382 aa)
	Cre-sad-1	CRE-SAD-1 protein. (925 aa)
	Cre-nud-1	CRE-NUD-1 protein. (315 aa)
	Cre-dhc-1	CRE-DHC-1 protein. (4583 aa)
	Cre-unc-11	CRE-UNC-11 protein. (641 aa)
	Cre-unc-116	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (839 aa)
	CRE_29931	Uncharacterized protein. (224 aa)
	Cre-unc-4	CRE-UNC-4 protein. (249 aa)
	Cre-nud-2	CRE-NUD-2 protein. (288 aa)
	Cre-cdk-5	CRE-CDK-5 protein; Belongs to the protein kinase superfamily. (292 aa)
	CRE_30190	Uncharacterized protein. (827 aa)
	Cre-unc-14	CRE-UNC-14 protein. (674 aa)
	CRE_15027	Uncharacterized protein; Belongs to the DOCK family. (544 aa)
	CRE_20604	Adaptin_N domain-containing protein. (166 aa)
	CRE_16535	DHR-2 domain-containing protein; Belongs to the DOCK family. (301 aa)
	Cre-abi-1	CRE-ABI-1 protein. (479 aa)
	Cre-apd-3	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family. (1235 aa)
	Cre-syd-2	CRE-SYD-2 protein. (1180 aa)
	Cre-ced-5	CRE-CED-5 protein; Belongs to the DOCK family. (1783 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_15027	CRE_16535	E3NK99	E3NQD5	Uncharacterized protein; Belongs to the DOCK family.	DHR-2 domain-containing protein; Belongs to the DOCK family.	0.437
CRE_15027	CRE_28094	E3NK99	E3LM93	Uncharacterized protein; Belongs to the DOCK family.	ANK_REP_REGION domain-containing protein.	0.503
CRE_15027	Cre-abi-1	E3NK99	E3LYY2	Uncharacterized protein; Belongs to the DOCK family.	CRE-ABI-1 protein.	0.835
CRE_15027	Cre-lrk-1	E3NK99	E3LM95	Uncharacterized protein; Belongs to the DOCK family.	CRE-LRK-1 protein.	0.503
CRE_16535	CRE_15027	E3NQD5	E3NK99	DHR-2 domain-containing protein; Belongs to the DOCK family.	Uncharacterized protein; Belongs to the DOCK family.	0.437
CRE_16535	CRE_28094	E3NQD5	E3LM93	DHR-2 domain-containing protein; Belongs to the DOCK family.	ANK_REP_REGION domain-containing protein.	0.503
CRE_16535	Cre-abi-1	E3NQD5	E3LYY2	DHR-2 domain-containing protein; Belongs to the DOCK family.	CRE-ABI-1 protein.	0.835
CRE_16535	Cre-lrk-1	E3NQD5	E3LM95	DHR-2 domain-containing protein; Belongs to the DOCK family.	CRE-LRK-1 protein.	0.503
CRE_20604	Cre-unc-11	E3NKV0	E3MG95	Adaptin_N domain-containing protein.	CRE-UNC-11 protein.	0.849
CRE_20604	Cre-unc-26	E3NKV0	E3M6A4	Adaptin_N domain-containing protein.	CRE-UNC-26 protein.	0.719
CRE_28094	CRE_15027	E3LM93	E3NK99	ANK_REP_REGION domain-containing protein.	Uncharacterized protein; Belongs to the DOCK family.	0.503
CRE_28094	CRE_16535	E3LM93	E3NQD5	ANK_REP_REGION domain-containing protein.	DHR-2 domain-containing protein; Belongs to the DOCK family.	0.503
CRE_28094	CRE_29931	E3LM93	E3MM89	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.503
CRE_28094	Cre-abi-1	E3LM93	E3LYY2	ANK_REP_REGION domain-containing protein.	CRE-ABI-1 protein.	0.645
CRE_28094	Cre-cdk-5	E3LM93	E3NAD1	ANK_REP_REGION domain-containing protein.	CRE-CDK-5 protein; Belongs to the protein kinase superfamily.	0.593
CRE_28094	Cre-cdka-1	E3LM93	E3MCV5	ANK_REP_REGION domain-containing protein.	Cyclin-dependent kinase 5 activator.	0.598
CRE_28094	Cre-ced-5	E3LM93	E3M5L3	ANK_REP_REGION domain-containing protein.	CRE-CED-5 protein; Belongs to the DOCK family.	0.503
CRE_28094	Cre-lrk-1	E3LM93	E3LM95	ANK_REP_REGION domain-containing protein.	CRE-LRK-1 protein.	0.674
CRE_28094	Cre-unc-116	E3LM93	E3MI93	ANK_REP_REGION domain-containing protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.509
CRE_28094	Cre-unc-16	E3LM93	E3LSD1	ANK_REP_REGION domain-containing protein.	CRE-UNC-16 protein.	0.645