(133 nodes) Neuron projection guidance network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_20516	Uncharacterized protein. (414 aa)
	CRE_13711	Uncharacterized protein. (469 aa)
	CRE_30431	Ig-like domain-containing protein. (197 aa)
	CRE_30466	Uncharacterized protein. (254 aa)
	Cre-plx-2	CRE-PLX-2 protein. (1817 aa)
	CRE_30190	Uncharacterized protein. (827 aa)
	Cre-unc-129	CRE-UNC-129 protein. (410 aa)
	Cre-zig-7	CRE-ZIG-7 protein. (255 aa)
	Cre-crml-1	CRE-CRML-1 protein. (788 aa)
	CRE_20102	Uncharacterized protein. (4924 aa)
	Cre-seu-1	CRE-SEU-1 protein. (739 aa)
	CRE_21031	Uncharacterized protein. (1062 aa)
	CRE_10731	Ephrin RBD domain-containing protein; Belongs to the ephrin family. (278 aa)
	CRE_31611	Uncharacterized protein. (464 aa)
	CRE_20644	Uncharacterized protein. (239 aa)
	CRE_15150	ANK_REP_REGION domain-containing protein. (956 aa)
	CRE_13857	Amidohydro-rel domain-containing protein. (276 aa)
	CRE_30335	Death domain-containing protein. (373 aa)
	CRE_21702	Uncharacterized protein. (361 aa)
	CRE_07192	Uncharacterized protein. (456 aa)
	CRE_04484	Uncharacterized protein. (150 aa)
	CRE_22276	Uncharacterized protein. (146 aa)
	CRE_07981	Uncharacterized protein. (179 aa)
	CRE_07982	Uncharacterized protein. (149 aa)
	Cre-plx-1	CRE-PLX-1 protein. (2015 aa)
	CRE_22899	Laminin N-terminal domain-containing protein. (262 aa)
	Cre-wrk-1	CRE-WRK-1 protein. (443 aa)
	Cre-mau-2	CRE-MAU-2 protein. (592 aa)
	CRE_16922	Uncharacterized protein. (1866 aa)
	CRE_16921	Uncharacterized protein. (5605 aa)
	CRE_16897	Uncharacterized protein. (791 aa)
	Cre-vab-1	CRE-VAB-1 protein. (1099 aa)
	Cre-unc-33	CRE-UNC-33 protein. (907 aa)
	Cre-unc-5	CRE-UNC-5 protein. (920 aa)
	Cre-crp-1	CRE-CRP-1 protein. (187 aa)
	Cre-tag-333	CRE-TAG-333 protein. (727 aa)
	CRE_04906	Uncharacterized protein. (682 aa)
	CRE_04905	SH2 domain-containing protein. (516 aa)
	Cre-lad-2	CRE-LAD-2 protein. (704 aa)
	CRE_29942	Uncharacterized protein. (493 aa)
	Cre-rack-1	CRE-RACK-1 protein. (325 aa)
	Cre-cwn-2	CRE-CWN-2 protein. (360 aa)
	CRE_31270	DZF domain-containing protein. (238 aa)
	Cre-dgn-3	CRE-DGN-3 protein. (449 aa)
	Cre-unc-116	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (839 aa)
	Cre-cam-1	CRE-CAM-1 protein. (923 aa)
	Cre-unc-42	CRE-UNC-42 protein. (267 aa)
	Cre-unc-73	CRE-UNC-73 protein. (2483 aa)
	Cre-smp-2	CRE-SMP-2 protein; Belongs to the semaphorin family. (657 aa)
	CRE_20798	DZF domain-containing protein. (841 aa)
	Cre-smp-1	CRE-SMP-1 protein; Belongs to the semaphorin family. (711 aa)
	Cre-unc-51	CRE-UNC-51 protein. (903 aa)
	CRE_21114	Protein kinase domain-containing protein. (724 aa)
	CRE_22356	Uncharacterized protein. (252 aa)
	Cre-sad-1	CRE-SAD-1 protein. (925 aa)
	Cre-efn-3	CRE-EFN-3 protein; Belongs to the ephrin family. (199 aa)
	Cre-cdka-1	Cyclin-dependent kinase 5 activator. (382 aa)
	Cre-unc-3	CRE-UNC-3 protein. (484 aa)
	CRE_15303	Uncharacterized protein. (574 aa)
	Cre-slt-1	CRE-SLT-1 protein. (857 aa)
	Cre-madd-2	CRE-MADD-2 protein. (748 aa)
	Cre-sor-3	CRE-SOR-3 protein. (1220 aa)
	Cre-ncam-1	CRE-NCAM-1 protein. (970 aa)
	Cre-efn-4	CRE-EFN-4 protein; Belongs to the ephrin family. (356 aa)
	Cre-gex-2	CRE-GEX-2 protein. (1125 aa)
	CRE_10192	Uncharacterized protein. (285 aa)
	Cre-unc-30	Homeobox protein. (326 aa)
	Cre-zag-1	CRE-ZAG-1 protein. (610 aa)
	CRE_10975	Ephrin RBD domain-containing protein; Belongs to the ephrin family. (278 aa)
	CRE_08660	Uncharacterized protein. (308 aa)
	Cre-epi-1	CRE-EPI-1 protein. (3753 aa)
	Cre-efn-2	CRE-EFN-2 protein; Belongs to the ephrin family. (218 aa)
	Cre-rig-6	CRE-RIG-6 protein. (1216 aa)
	CRE_08659	Uncharacterized protein. (400 aa)
	CRE_08658	Uncharacterized protein. (407 aa)
	Cre-ptp-3	CRE-PTP-3 protein. (2284 aa)
	Cre-unc-53	CRE-UNC-53 protein. (1671 aa)
	Cre-unc-130	CRE-UNC-130 protein. (335 aa)
	Cre-max-2	Non-specific serine/threonine protein kinase. (637 aa)
	Cre-sax-3	CRE-SAX-3 protein. (697 aa)
	Cre-zig-6	CRE-ZIG-6 protein. (242 aa)
	Cre-ddr-1	CRE-DDR-1 protein. (768 aa)
	Cre-pak-1	Non-specific serine/threonine protein kinase. (570 aa)
	Cre-rig-3	CRE-RIG-3 protein. (488 aa)
	Cre-unc-6	CRE-UNC-6 protein. (612 aa)
	Cre-ddr-2	CRE-DDR-2 protein. (767 aa)
	Cre-zig-4	CRE-ZIG-4 protein. (265 aa)
	Cre-zig-3	CRE-ZIG-3 protein. (247 aa)
	Cre-dim-1	CRE-DIM-1 protein. (324 aa)
	Cre-zig-1	CRE-ZIG-1 protein. (265 aa)
	Cre-eak-6	CRE-EAK-6 protein. (392 aa)
	Cre-mig-15	CRE-MIG-15 protein. (1089 aa)
	Cre-pxn-2	CRE-PXN-2 protein. (1360 aa)
	Cre-dgn-1	CRE-DGN-1 protein. (585 aa)
	Cre-mig-2	CRE-MIG-2 protein. (195 aa)
	Cre-sdn-1	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (295 aa)
	CRE_06473	Uncharacterized protein. (1078 aa)
	CRE_05397	Uncharacterized protein. (3120 aa)
	Cre-rpm-1	CRE-RPM-1 protein. (3664 aa)
	CRE_04841	Uncharacterized protein. (466 aa)
	CRE_04008	Uncharacterized protein. (618 aa)
	Cre-mab-20	CRE-MAB-20 protein; Belongs to the semaphorin family. (659 aa)
	Cre-src-1	Tyrosine-protein kinase. (525 aa)
	Cre-ceh-17	CRE-CEH-17 protein. (231 aa)
	CRE_03656	Uncharacterized protein. (496 aa)
	Cre-unc-40	CRE-UNC-40 protein. (1432 aa)
	Cre-lam-3	CRE-LAM-3 protein. (3122 aa)
	CRE_29771	Uncharacterized protein. (1045 aa)
	Cre-cle-1	CRE-CLE-1 protein. (1235 aa)
	Cre-axl-1	CRE-AXL-1 protein. (398 aa)
	Cre-fmi-1	CRE-FMI-1 protein. (2600 aa)
	Cre-nid-1	CRE-NID-1 protein. (1609 aa)
	CRE_30662	Homeobox domain-containing protein. (207 aa)
	Cre-unc-39	CRE-UNC-39 protein. (374 aa)
	Cre-egl-46	CRE-EGL-46 protein. (284 aa)
	Cre-ten-1	CRE-TEN-1 protein. (2623 aa)
	CRE_25190	Uncharacterized protein. (195 aa)
	CRE_25187	Uncharacterized protein. (529 aa)
	CRE_26544	Uncharacterized protein. (325 aa)
	Cre-spon-1	CRE-SPON-1 protein. (831 aa)
	CRE_27097	Uncharacterized protein. (822 aa)
	Cre-vab-8	CRE-VAB-8 protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1063 aa)
	Cre-wve-1	CRE-WVE-1 protein. (501 aa)
	CRE_28206	Uncharacterized protein. (566 aa)
	Cre-lrk-1	CRE-LRK-1 protein. (2095 aa)
	CRE_28094	ANK_REP_REGION domain-containing protein. (275 aa)
	Cre-lin-17	CRE-LIN-17 protein; Belongs to the G-protein coupled receptor Fz/Smo family. (557 aa)
	CRE_18890	Ig-like domain-containing protein. (300 aa)
	Cre-unc-34	CRE-UNC-34 protein. (463 aa)
	CRE_08661	Uncharacterized protein. (393 aa)
	CRE_05959	Uncharacterized protein. (253 aa)
	CRE_31441	Uncharacterized protein. (954 aa)
	CRE_31442	Uncharacterized protein. (1601 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_03656	CRE_29942	E3LXH9	E3MMA2	Uncharacterized protein.	Uncharacterized protein.	0.494
CRE_03656	CRE_31611	E3LXH9	E3NRU7	Uncharacterized protein.	Uncharacterized protein.	0.494
CRE_03656	Cre-lad-2	E3LXH9	E3MMA4	Uncharacterized protein.	CRE-LAD-2 protein.	0.494
CRE_03656	Cre-mab-20	E3LXH9	E3LXX6	Uncharacterized protein.	CRE-MAB-20 protein; Belongs to the semaphorin family.	0.652
CRE_03656	Cre-plx-1	E3LXH9	E3MXT1	Uncharacterized protein.	CRE-PLX-1 protein.	0.549
CRE_03656	Cre-plx-2	E3LXH9	E3NEQ6	Uncharacterized protein.	CRE-PLX-2 protein.	0.549
CRE_03656	Cre-ptp-3	E3LXH9	E3LFH4	Uncharacterized protein.	CRE-PTP-3 protein.	0.606
CRE_03656	Cre-rig-6	E3LXH9	E3M476	Uncharacterized protein.	CRE-RIG-6 protein.	0.494
CRE_03656	Cre-smp-1	E3LXH9	E3MFE0	Uncharacterized protein.	CRE-SMP-1 protein; Belongs to the semaphorin family.	0.652
CRE_03656	Cre-smp-2	E3LXH9	E3MGB5	Uncharacterized protein.	CRE-SMP-2 protein; Belongs to the semaphorin family.	0.652
CRE_03656	Cre-src-1	E3LXH9	E3LXJ8	Uncharacterized protein.	Tyrosine-protein kinase.	0.581
CRE_04008	CRE_05959	E3LYC3	E3MZ96	Uncharacterized protein.	Uncharacterized protein.	0.429
CRE_04008	CRE_22356	E3LYC3	E3MEA3	Uncharacterized protein.	Uncharacterized protein.	0.429
CRE_04008	CRE_26544	E3LYC3	E3LR59	Uncharacterized protein.	Uncharacterized protein.	0.774
CRE_04008	CRE_29942	E3LYC3	E3MMA2	Uncharacterized protein.	Uncharacterized protein.	0.472
CRE_04008	CRE_30335	E3LYC3	E3NUY5	Uncharacterized protein.	Death domain-containing protein.	0.648
CRE_04008	CRE_30466	E3LYC3	E3NDY5	Uncharacterized protein.	Uncharacterized protein.	0.429
CRE_04008	CRE_31441	E3LYC3	E3N5X8	Uncharacterized protein.	Uncharacterized protein.	0.514
CRE_04008	CRE_31442	E3LYC3	E3N5X9	Uncharacterized protein.	Uncharacterized protein.	0.514
CRE_04008	CRE_31611	E3LYC3	E3NRU7	Uncharacterized protein.	Uncharacterized protein.	0.472