(15 nodes) Regulation of autophagosome assembly network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-atg-7	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy. (642 aa)
	Cre-tag-236	CRE-TAG-236 protein. (613 aa)
	CRE_03861	Uncharacterized protein. (477 aa)
	Cre-epg-3	CRE-EPG-3 protein. (469 aa)
	Cre-daf-2	Receptor protein-tyrosine kinase. (1883 aa)
	CRE_08746	Uncharacterized protein. (300 aa)
	Cre-lgg-1	Protein lgg. (123 aa)
	CRE_25354	UDENN FLCN/SMCR8-type domain-containing protein. (512 aa)
	CRE_25101	Uncharacterized protein. (315 aa)
	CRE_05326	Uncharacterized protein. (70 aa)
	CRE_07920	Raptor_N domain-containing protein. (1611 aa)
	Cre-daf-15	CRE-DAF-15 protein. (1842 aa)
	Cre-rsks-1	Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily. (544 aa)
	Cre-rbg-1	CRE-RBG-1 protein. (917 aa)
	CRE_12621	Uncharacterized protein. (338 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_05326	CRE_07920	E3NR76	E3NPU4	Uncharacterized protein.	Raptor_N domain-containing protein.	0.433
CRE_05326	Cre-daf-15	E3NR76	E3N5S1	Uncharacterized protein.	CRE-DAF-15 protein.	0.433
CRE_05326	Cre-epg-3	E3NR76	E3LX68	Uncharacterized protein.	CRE-EPG-3 protein.	0.529
CRE_05326	Cre-lgg-1	E3NR76	E3LR71	Uncharacterized protein.	Protein lgg.	0.997
CRE_07920	CRE_05326	E3NPU4	E3NR76	Raptor_N domain-containing protein.	Uncharacterized protein.	0.433
CRE_07920	CRE_12621	E3NPU4	E3M7Y8	Raptor_N domain-containing protein.	Uncharacterized protein.	0.996
CRE_07920	Cre-atg-7	E3NPU4	E3M7N4	Raptor_N domain-containing protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.433
CRE_07920	Cre-daf-2	E3NPU4	E3LWG9	Raptor_N domain-containing protein.	Receptor protein-tyrosine kinase.	0.761
CRE_07920	Cre-lgg-1	E3NPU4	E3LR71	Raptor_N domain-containing protein.	Protein lgg.	0.426
CRE_07920	Cre-rsks-1	E3NPU4	E3MI64	Raptor_N domain-containing protein.	Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily.	0.986
CRE_08746	Cre-epg-3	E3LHB3	E3LX68	Uncharacterized protein.	CRE-EPG-3 protein.	0.731
CRE_12621	CRE_07920	E3M7Y8	E3NPU4	Uncharacterized protein.	Raptor_N domain-containing protein.	0.996
CRE_12621	Cre-daf-15	E3M7Y8	E3N5S1	Uncharacterized protein.	CRE-DAF-15 protein.	0.996
CRE_12621	Cre-daf-2	E3M7Y8	E3LWG9	Uncharacterized protein.	Receptor protein-tyrosine kinase.	0.562
CRE_12621	Cre-rsks-1	E3M7Y8	E3MI64	Uncharacterized protein.	Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily.	0.833
CRE_25101	Cre-epg-3	E3LSX0	E3LX68	Uncharacterized protein.	CRE-EPG-3 protein.	0.731
Cre-atg-7	CRE_07920	E3M7N4	E3NPU4	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Raptor_N domain-containing protein.	0.433
Cre-atg-7	Cre-daf-15	E3M7N4	E3N5S1	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	CRE-DAF-15 protein.	0.433
Cre-atg-7	Cre-epg-3	E3M7N4	E3LX68	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	CRE-EPG-3 protein.	0.529
Cre-atg-7	Cre-lgg-1	E3M7N4	E3LR71	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Protein lgg.	0.997