10 items (Caenorhabditis remanei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-rpn-3	CRE-RPN-3 protein. (506 aa)
	Cre-rpn-5	CRE-RPN-5 protein. (507 aa)
	Cre-dss-1	CRE-DSS-1 protein. (86 aa)
	Cre-rpn-12	CRE-RPN-12 protein. (250 aa)
	Cre-rpn-9	CRE-RPN-9 protein. (390 aa)
	Cre-rpn-10	CRE-RPN-10 protein. (350 aa)
	Cre-rpt-1	CRE-RPT-1 protein; Belongs to the AAA ATPase family. (435 aa)
	CRE_25584	MPN domain-containing protein. (319 aa)
	CRE_03157	RPN13_C domain-containing protein. (387 aa)
	CRE_11090	PCI domain-containing protein. (489 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_03157	CRE_11090	E3LWV1	E3M5G9	RPN13_C domain-containing protein.	PCI domain-containing protein.	0.990
CRE_03157	CRE_25584	E3LWV1	E3LSF4	RPN13_C domain-containing protein.	MPN domain-containing protein.	0.983
CRE_03157	Cre-dss-1	E3LWV1	E3NGB8	RPN13_C domain-containing protein.	CRE-DSS-1 protein.	0.965
CRE_03157	Cre-rpn-10	E3LWV1	E3LMP7	RPN13_C domain-containing protein.	CRE-RPN-10 protein.	0.999
CRE_03157	Cre-rpn-12	E3LWV1	E3LF40	RPN13_C domain-containing protein.	CRE-RPN-12 protein.	0.998
CRE_03157	Cre-rpn-3	E3LWV1	E3MI14	RPN13_C domain-containing protein.	CRE-RPN-3 protein.	0.998
CRE_03157	Cre-rpn-5	E3LWV1	E3MXE6	RPN13_C domain-containing protein.	CRE-RPN-5 protein.	0.996
CRE_03157	Cre-rpn-9	E3LWV1	E3LFC8	RPN13_C domain-containing protein.	CRE-RPN-9 protein.	0.997
CRE_03157	Cre-rpt-1	E3LWV1	E3LPW3	RPN13_C domain-containing protein.	CRE-RPT-1 protein; Belongs to the AAA ATPase family.	0.999
CRE_11090	CRE_03157	E3M5G9	E3LWV1	PCI domain-containing protein.	RPN13_C domain-containing protein.	0.990
CRE_11090	CRE_25584	E3M5G9	E3LSF4	PCI domain-containing protein.	MPN domain-containing protein.	0.989
CRE_11090	Cre-dss-1	E3M5G9	E3NGB8	PCI domain-containing protein.	CRE-DSS-1 protein.	0.954
CRE_11090	Cre-rpn-10	E3M5G9	E3LMP7	PCI domain-containing protein.	CRE-RPN-10 protein.	0.998
CRE_11090	Cre-rpn-12	E3M5G9	E3LF40	PCI domain-containing protein.	CRE-RPN-12 protein.	0.998
CRE_11090	Cre-rpn-3	E3M5G9	E3MI14	PCI domain-containing protein.	CRE-RPN-3 protein.	0.998
CRE_11090	Cre-rpn-9	E3M5G9	E3LFC8	PCI domain-containing protein.	CRE-RPN-9 protein.	0.998
CRE_11090	Cre-rpt-1	E3M5G9	E3LPW3	PCI domain-containing protein.	CRE-RPT-1 protein; Belongs to the AAA ATPase family.	0.997
CRE_25584	CRE_03157	E3LSF4	E3LWV1	MPN domain-containing protein.	RPN13_C domain-containing protein.	0.983
CRE_25584	CRE_11090	E3LSF4	E3M5G9	MPN domain-containing protein.	PCI domain-containing protein.	0.989
CRE_25584	Cre-dss-1	E3LSF4	E3NGB8	MPN domain-containing protein.	CRE-DSS-1 protein.	0.955