(98 nodes) External encapsulating structure network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-cdh-3	CRE-CDH-3 protein. (3351 aa)
	CRE_31200	Uncharacterized protein. (156 aa)
	Cre-gon-1	CRE-GON-1 protein. (2717 aa)
	Cre-pxf-1	CRE-PXF-1 protein. (1476 aa)
	Cre-ave-1	CRE-AVE-1 protein. (136 aa)
	Cre-mig-17	CRE-MIG-17 protein. (494 aa)
	Cre-sqv-4	UDP-glucose 6-dehydrogenase; Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (481 aa)
	CRE_13469	Uncharacterized protein. (1815 aa)
	CRE_17312	Chitin-binding type-2 domain-containing protein. (111 aa)
	CRE_15583	Ig-like domain-containing protein. (376 aa)
	CRE_12166	Uncharacterized protein. (922 aa)
	Cre-pir-1	CRE-PIR-1 protein. (229 aa)
	CRE_09728	Collagen IV NC1 domain-containing protein. (165 aa)
	CRE_27809	Uncharacterized protein. (76 aa)
	Cre-clec-78	CRE-CLEC-78 protein. (422 aa)
	CRE_27800	Uncharacterized protein. (1784 aa)
	CRE_27801	Uncharacterized protein. (1349 aa)
	CRE_14913	ShKT domain-containing protein. (674 aa)
	CRE_17511	Uncharacterized protein. (171 aa)
	Cre-noah-2	CRE-NOAH-2 protein. (742 aa)
	CRE_16306	Uncharacterized protein. (71 aa)
	CRE_16307	Uncharacterized protein. (118 aa)
	Cre-cpz-1	CRE-CPZ-1 protein; Belongs to the peptidase C1 family. (306 aa)
	CRE_06088	Uncharacterized protein. (71 aa)
	CRE_06089	Uncharacterized protein. (73 aa)
	CRE_06060	Uncharacterized protein. (73 aa)
	CRE_06090	Uncharacterized protein. (73 aa)
	CRE_06063	Uncharacterized protein. (73 aa)
	CRE_01348	Anaphylatoxin-like domain-containing protein. (184 aa)
	CRE_01349	Fibulin-1; Belongs to the fibulin family. (653 aa)
	Cre-ost-1	CRE-OST-1 protein. (264 aa)
	Cre-tol-1	CRE-TOL-1 protein. (358 aa)
	Cre-dpy-13	CRE-DPY-13 protein. (304 aa)
	CRE_20619	Pep_M12B_propep domain-containing protein. (281 aa)
	Cre-bcc-1.2	CRE-BCC-1.2 protein. (528 aa)
	CRE_27943	GON domain-containing protein. (382 aa)
	CRE_15812	Fibulin-1; Belongs to the fibulin family. (867 aa)
	CRE_15813	Uncharacterized protein. (175 aa)
	CRE_10739	Uncharacterized protein. (424 aa)
	Cre-lam-1	CRE-LAM-1 protein. (1264 aa)
	CRE_18330	Ig-like domain-containing protein. (372 aa)
	CRE_20640	Uncharacterized protein. (74 aa)
	CRE_20641	Uncharacterized protein. (192 aa)
	CRE_23261	Uncharacterized protein. (73 aa)
	CRE_04460	Uncharacterized protein. (84 aa)
	CRE_27991	Uncharacterized protein. (254 aa)
	CRE_06254	Uncharacterized protein. (421 aa)
	CRE_29421	TonB_dep_Rec domain-containing protein. (311 aa)
	Cre-eng-1	CRE-ENG-1 protein. (448 aa)
	Cre-swp-1	CRE-SWP-1 protein. (798 aa)
	CRE_04757	Uncharacterized protein. (469 aa)
	CRE_05501	NTR domain-containing protein. (153 aa)
	Cre-pxn-1	CRE-PXN-1 protein. (1317 aa)
	CRE_07445	Apple domain-containing protein. (847 aa)
	Cre-pxn-2	CRE-PXN-2 protein. (1360 aa)
	Cre-bli-2	CRE-BLI-2 protein. (311 aa)
	Cre-bcc-1.1	CRE-BCC-1.1 protein. (558 aa)
	Cre-him-4	CRE-HIM-4 protein. (2924 aa)
	CRE_16675	Uncharacterized protein. (1105 aa)
	CRE_16676	Uncharacterized protein. (1247 aa)
	Cre-acl-1	1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family. (262 aa)
	Cre-mec-5	CRE-MEC-5 protein. (327 aa)
	Cre-tag-131	CRE-TAG-131 protein. (326 aa)
	Cre-cutl-20	CRE-CUTL-20 protein. (351 aa)
	CRE_27584	Uncharacterized protein. (449 aa)
	Cre-let-2	CRE-LET-2 protein. (1293 aa)
	CRE_31186	Uncharacterized protein. (443 aa)
	CRE_00013	Uncharacterized protein. (1184 aa)
	CRE_00892	Uncharacterized protein. (139 aa)
	CRE_00894	Uncharacterized protein. (138 aa)
	Cre-adt-2	CRE-ADT-2 protein. (1042 aa)
	Cre-ets-4	CRE-ETS-4 protein. (463 aa)
	Cre-ncr-1	CRE-NCR-1 protein. (1382 aa)
	CRE_00856	Peptidase M12B domain-containing protein. (949 aa)
	Cre-lec-1	Galectin. (284 aa)
	Cre-cut-1	CRE-CUT-1 protein. (441 aa)
	Cre-cut-3	CRE-CUT-3 protein. (437 aa)
	CRE_18942	Uncharacterized protein. (439 aa)
	Cre-mig-6	CRE-MIG-6 protein. (1553 aa)
	Cre-cpg-2	CRE-CPG-2 protein. (526 aa)
	Cre-fipr-1	CRE-FIPR-1 protein. (72 aa)
	CRE_27249	Uncharacterized protein. (104 aa)
	CRE_27250	Uncharacterized protein. (223 aa)
	Cre-sqt-3	CRE-SQT-3 protein. (301 aa)
	Cre-spon-1	CRE-SPON-1 protein. (831 aa)
	Cre-cutl-16	CRE-CUTL-16 protein. (486 aa)
	CRE_25533	Uncharacterized protein. (538 aa)
	Cre-emb-9	CRE-EMB-9 protein. (1804 aa)
	CRE_25094	Uncharacterized protein. (440 aa)
	CRE_30685	Uncharacterized protein. (77 aa)
	CRE_30953	Uncharacterized protein. (77 aa)
	CRE_30689	Uncharacterized protein. (77 aa)
	CRE_30956	Uncharacterized protein. (77 aa)
	Cre-nid-1	CRE-NID-1 protein. (1609 aa)
	CRE_31093	Post-GPI attachment to proteins factor 3; Involved in the lipid remodeling steps of GPI-anchor maturation; Belongs to the PGAP3 family. (324 aa)
	CRE_30867	DC_STAMP domain-containing protein. (810 aa)
	Cre-dpy-5	CRE-DPY-5 protein. (284 aa)
	CRE_04504	Uncharacterized protein. (149 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_00013	Cre-pxn-1	E3LCB3	E3LZU3	Uncharacterized protein.	CRE-PXN-1 protein.	0.506
CRE_00013	Cre-pxn-2	E3LCB3	E3M2I2	Uncharacterized protein.	CRE-PXN-2 protein.	0.506
CRE_00013	Cre-tol-1	E3LCB3	E3NFE3	Uncharacterized protein.	CRE-TOL-1 protein.	0.473
CRE_00856	CRE_01348	E3LEQ3	E3ND97	Peptidase M12B domain-containing protein.	Anaphylatoxin-like domain-containing protein.	0.553
CRE_00856	CRE_01349	E3LEQ3	E3ND98	Peptidase M12B domain-containing protein.	Fibulin-1; Belongs to the fibulin family.	0.553
CRE_00856	CRE_12166	E3LEQ3	E3N0A7	Peptidase M12B domain-containing protein.	Uncharacterized protein.	0.548
CRE_00856	CRE_15812	E3LEQ3	E3NPE1	Peptidase M12B domain-containing protein.	Fibulin-1; Belongs to the fibulin family.	0.553
CRE_00856	CRE_15813	E3LEQ3	E3NPE2	Peptidase M12B domain-containing protein.	Uncharacterized protein.	0.553
CRE_00856	CRE_18942	E3LEQ3	E3LK90	Peptidase M12B domain-containing protein.	Uncharacterized protein.	0.592
CRE_00856	CRE_20619	E3LEQ3	E3NML8	Peptidase M12B domain-containing protein.	Pep_M12B_propep domain-containing protein.	0.475
CRE_00856	CRE_27800	E3LEQ3	E3N5J7	Peptidase M12B domain-containing protein.	Uncharacterized protein.	0.529
CRE_00856	CRE_27801	E3LEQ3	E3N5J9	Peptidase M12B domain-containing protein.	Uncharacterized protein.	0.529
CRE_00856	CRE_31186	E3LEQ3	E3MLH2	Peptidase M12B domain-containing protein.	Uncharacterized protein.	0.458
CRE_00856	Cre-adt-2	E3LEQ3	E3LCM4	Peptidase M12B domain-containing protein.	CRE-ADT-2 protein.	0.488
CRE_00856	Cre-clec-78	E3LEQ3	E3N5J0	Peptidase M12B domain-containing protein.	CRE-CLEC-78 protein.	0.529
CRE_00856	Cre-emb-9	E3LEQ3	E3LSI3	Peptidase M12B domain-containing protein.	CRE-EMB-9 protein.	0.458
CRE_00856	Cre-gon-1	E3LEQ3	E3MLY6	Peptidase M12B domain-containing protein.	CRE-GON-1 protein.	0.517
CRE_00856	Cre-mig-6	E3LEQ3	E3LKC5	Peptidase M12B domain-containing protein.	CRE-MIG-6 protein.	0.625
CRE_00856	Cre-nid-1	E3LEQ3	E3LTX5	Peptidase M12B domain-containing protein.	CRE-NID-1 protein.	0.500
CRE_00856	Cre-spon-1	E3LEQ3	E3LQK5	Peptidase M12B domain-containing protein.	CRE-SPON-1 protein.	0.651