(117 nodes) Ribosomal subunit network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_10244	Uncharacterized protein. (118 aa)
	CRE_00499	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (463 aa)
	Cre-rpl-11.2	CRE-RPL-11.2 protein; Belongs to the universal ribosomal protein uL5 family. (185 aa)
	Cre-rpl-41	CRE-RPL-41 protein; Belongs to the eukaryotic ribosomal protein eL42 family. (105 aa)
	CRE_01783	FHA domain-containing protein. (364 aa)
	CRE_02212	Uncharacterized protein. (422 aa)
	CRE_02233	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner. (576 aa)
	CRE_01885	Uncharacterized protein. (284 aa)
	Cre-rpl-32	CRE-RPL-32 protein. (134 aa)
	Cre-rpl-5	CRE-RPL-5 protein. (293 aa)
	Cre-rpl-10	CRE-RPL-10 protein. (214 aa)
	Cre-rpl-11.1	CRE-RPL-11.1 protein; Belongs to the universal ribosomal protein uL5 family. (196 aa)
	Cre-rpl-38	CRE-RPL-38 protein; Belongs to the eukaryotic ribosomal protein eL38 family. (70 aa)
	Cre-rps-27	CRE-RPS-27 protein. (83 aa)
	CRE_18550	Uncharacterized protein. (293 aa)
	CRE_28472	Uncharacterized protein. (216 aa)
	CRE_28168	RIBOSOMAL_L9 domain-containing protein. (352 aa)
	CRE_28178	Uncharacterized protein. (362 aa)
	CRE_28180	Uncharacterized protein. (356 aa)
	CRE_27425	Uncharacterized protein. (208 aa)
	CRE_27426	C2H2-type domain-containing protein. (629 aa)
	CRE_27151	Uncharacterized protein. (189 aa)
	CRE_26147	Uncharacterized protein. (129 aa)
	Cre-rpl-33	CRE-RPL-33 protein. (154 aa)
	CRE_26502	SpoU_methylase domain-containing protein. (1229 aa)
	CRE_26503	Uncharacterized protein. (155 aa)
	Cre-rps-14	CRE-RPS-14 protein; Belongs to the universal ribosomal protein uS11 family. (152 aa)
	Cre-rpl-36	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (119 aa)
	Cre-rpl-6	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (217 aa)
	CRE_25107	Uncharacterized protein. (181 aa)
	CRE_25427	Uncharacterized protein. (170 aa)
	Cre-rpl-21	CRE-RPL-21 protein. (161 aa)
	CRE_25461	Uncharacterized protein. (158 aa)
	Cre-rpl-16	CRE-RPL-16 protein; Belongs to the universal ribosomal protein uL13 family. (202 aa)
	Cre-rps-7	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (202 aa)
	Cre-rps-17	CRE-RPS-17 protein. (130 aa)
	CRE_29451	Uncharacterized protein. (159 aa)
	CRE_29504	KOW domain-containing protein. (278 aa)
	Cre-rps-15	CRE-RPS-15 protein; Belongs to the universal ribosomal protein uS19 family. (151 aa)
	Cre-tag-264	CRE-TAG-264 protein. (710 aa)
	CRE_03025	Ribosomal_S10 domain-containing protein. (158 aa)
	Cre-rps-3	CRE-RPS-3 protein; Belongs to the universal ribosomal protein uS3 family. (255 aa)
	Cre-rps-13	CRE-RPS-13 protein; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	CRE_03651	Uncharacterized protein. (288 aa)
	Cre-rps-10	CRE-RPS-10 protein. (151 aa)
	Cre-rpl-24.1	CRE-RPL-24.1 protein. (159 aa)
	CRE_03681	Uncharacterized protein. (630 aa)
	CRE_03682	Ribosomal_L18e/L15P domain-containing protein. (298 aa)
	Cre-rpl-4	CRE-RPL-4 protein. (345 aa)
	Cre-rla-1	CRE-RLA-1 protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (111 aa)
	CRE_03962	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (145 aa)
	Cre-rps-12	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (140 aa)
	CRE_04754	RF_PROK_I domain-containing protein. (168 aa)
	CRE_05535	Uncharacterized protein. (243 aa)
	CRE_08115	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (467 aa)
	Cre-rpl-7	CRE-RPL-7 protein. (244 aa)
	Cre-rps-19	CRE-RPS-19 protein. (146 aa)
	Cre-rpl-14	CRE-RPL-14 protein. (135 aa)
	Cre-rps-2	CRE-RPS-2 protein; Belongs to the universal ribosomal protein uS5 family. (272 aa)
	Cre-rpl-12	CRE-RPL-12 protein; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	CRE_12533	Uncharacterized protein. (167 aa)
	CRE_12771	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (210 aa)
	CRE_12804	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (155 aa)
	Cre-rps-26	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (117 aa)
	Cre-rpl-31	CRE-RPL-31 protein. (122 aa)
	CRE_16136	Methyltranfer_dom domain-containing protein. (387 aa)
	CRE_20182	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (495 aa)
	CRE_20298	Uncharacterized protein. (403 aa)
	Cre-rps-0	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (276 aa)
	CRE_20334	Ribosomal_L16 domain-containing protein. (239 aa)
	CRE_20252	Uncharacterized protein. (228 aa)
	Cre-mrpl-41	CRE-MRPL-41 protein. (190 aa)
	CRE_21144	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (161 aa)
	Cre-rpl-2	CRE-RPL-2 protein. (260 aa)
	CRE_24015	Uncharacterized protein. (162 aa)
	CRE_24996	Ribosomal protein L37; Binds to the 23S rRNA. (92 aa)
	CRE_01045	Uncharacterized protein. (184 aa)
	CRE_19220	Ubiquitin-like domain-containing protein. (81 aa)
	Cre-rpl-35	CRE-RPL-35 protein. (123 aa)
	CRE_04088	Uncharacterized protein. (431 aa)
	CRE_07565	Uncharacterized protein. (125 aa)
	CRE_07566	Uncharacterized protein. (100 aa)
	Cre-rps-25	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (117 aa)
	CRE_16175	Uncharacterized protein. (187 aa)
	CRE_15479	Uncharacterized protein. (199 aa)
	CRE_07160	Uncharacterized protein. (110 aa)
	Cre-rps-23	CRE-RPS-23 protein; Belongs to the universal ribosomal protein uS12 family. (143 aa)
	Cre-ubl-1	CRE-UBL-1 protein. (160 aa)
	Cre-rpl-9	CRE-RPL-9 protein. (189 aa)
	Cre-rps-24	CRE-RPS-24 protein. (131 aa)
	CRE_30063	Uncharacterized protein. (194 aa)
	CRE_11360	MRP-S28 domain-containing protein. (360 aa)
	CRE_12975	Methyltranfer_dom domain-containing protein. (726 aa)
	CRE_12932	Methyltranfer_dom domain-containing protein. (362 aa)
	CRE_14182	Uncharacterized protein. (363 aa)
	Cre-rps-20	CRE-RPS-20 protein. (117 aa)
	CRE_20492	Uncharacterized protein. (73 aa)
	Cre-rpl-1	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (216 aa)
	CRE_01247	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (220 aa)
	CRE_06016	Uncharacterized protein. (180 aa)
	CRE_12251	Uncharacterized protein. (169 aa)
	Cre-rps-28	CRE-RPS-28 protein. (65 aa)
	CRE_16413	Ribosomal_S7 domain-containing protein. (229 aa)
	Cre-rps-16	CRE-RPS-16 protein; Belongs to the universal ribosomal protein uS9 family. (159 aa)
	CRE_30165	Uncharacterized protein. (205 aa)
	CRE_02774	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (154 aa)
	CRE_10666	L51_S25_CI-B8 domain-containing protein. (170 aa)
	CRE_10651	Uncharacterized protein. (346 aa)
	CRE_05231	SRR1 domain-containing protein. (229 aa)
	CRE_31545	Uncharacterized protein. (358 aa)
	CRE_08595	Protein kinase domain-containing protein. (410 aa)
	CRE_04438	Ribosomal_L18e/L15P domain-containing protein. (188 aa)
	CRE_15252	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (62 aa)
	CRE_14372	Uncharacterized protein. (151 aa)
	CRE_15202	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (161 aa)
	CRE_29285	Ribosomal_S7 domain-containing protein. (222 aa)
	CRE_26933	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (218 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_00499	CRE_01247	E3LCC5	E3N4S6	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.882
CRE_00499	CRE_01783	E3LCC5	E3LFF9	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	FHA domain-containing protein.	0.718
CRE_00499	CRE_02774	E3LCC5	E3NEN2	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.923
CRE_00499	CRE_03025	E3LCC5	E3LW64	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Ribosomal_S10 domain-containing protein.	0.954
CRE_00499	CRE_03681	E3LCC5	E3LXN2	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Uncharacterized protein.	0.703
CRE_00499	CRE_03682	E3LCC5	E3LXN3	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Ribosomal_L18e/L15P domain-containing protein.	0.703
CRE_00499	CRE_03962	E3LCC5	E3LY26	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.	0.912
CRE_00499	CRE_04438	E3LCC5	E3NKC1	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Ribosomal_L18e/L15P domain-containing protein.	0.920
CRE_00499	CRE_05535	E3LCC5	E3LZT9	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Uncharacterized protein.	0.823
CRE_00499	CRE_07160	E3LCC5	E3MT03	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Uncharacterized protein.	0.838
CRE_00499	CRE_07565	E3LCC5	E3MP92	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Uncharacterized protein.	0.835
CRE_00499	CRE_07566	E3LCC5	E3MP93	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Uncharacterized protein.	0.835
CRE_00499	CRE_12771	E3LCC5	E3M7P6	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.879
CRE_00499	CRE_12804	E3LCC5	E3M7Y9	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	0.893
CRE_00499	CRE_15202	E3LCC5	E3NRM9	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.879
CRE_00499	CRE_15252	E3LCC5	E3NKU4	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.797
CRE_00499	CRE_16413	E3LCC5	E3NC54	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Ribosomal_S7 domain-containing protein.	0.805
CRE_00499	CRE_19220	E3LCC5	E3MJI2	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Ubiquitin-like domain-containing protein.	0.846
CRE_00499	CRE_20252	E3LCC5	E3MCY2	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Uncharacterized protein.	0.413
CRE_00499	CRE_20298	E3LCC5	E3MCL4	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Uncharacterized protein.	0.839