(90 nodes) Plasma membrane signaling receptor complex network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-mex-1	CRE-MEX-1 protein. (518 aa)
	Cre-eat-2	CRE-EAT-2 protein. (486 aa)
	Cre-ina-1	CRE-INA-1 protein; Belongs to the integrin alpha chain family. (1145 aa)
	CRE_30875	Uncharacterized protein. (714 aa)
	Cre-daf-2	Receptor protein-tyrosine kinase. (1883 aa)
	CRE_03693	Uncharacterized protein. (431 aa)
	CRE_03696	Uncharacterized protein. (115 aa)
	CRE_03697	Uncharacterized protein. (235 aa)
	CRE_04673	AMP-binding domain-containing protein. (896 aa)
	Cre-daf-4	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (684 aa)
	CRE_04744	Uncharacterized protein. (153 aa)
	CRE_04745	Uncharacterized protein. (122 aa)
	CRE_05539	Uncharacterized protein. (430 aa)
	CRE_05660	Uncharacterized protein. (335 aa)
	CRE_05661	Uncharacterized protein. (319 aa)
	CRE_05662	RAI1 domain-containing protein. (325 aa)
	Cre-abl-1	Tyrosine-protein kinase. (1287 aa)
	CRE_07528	G_PROTEIN_RECEP_F3_4 domain-containing protein. (961 aa)
	CRE_08047	Uncharacterized protein. (674 aa)
	CRE_08123	Uncharacterized protein. (489 aa)
	Cre-afd-1	CRE-AFD-1 protein. (1310 aa)
	Cre-spsb-1	CRE-SPSB-1 protein. (619 aa)
	CRE_11732	PPM-type phosphatase domain-containing protein. (772 aa)
	Cre-nmr-1	CRE-NMR-1 protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (1058 aa)
	Cre-cex-1	CRE-CEX-1 protein. (205 aa)
	CRE_10228	G_PROTEIN_RECEP_F3_4 domain-containing protein; Belongs to the G-protein coupled receptor 3 family. (759 aa)
	CRE_10086	Protein kinase domain-containing protein. (910 aa)
	Cre-daf-1	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (703 aa)
	Cre-rap-3	CRE-RAP-3 protein. (259 aa)
	Cre-nit-1	CRE-NIT-1 protein. (321 aa)
	Cre-tir-1	CRE-TIR-1 protein. (943 aa)
	CRE_13282	Uncharacterized protein. (247 aa)
	Cre-vps-45	CRE-VPS-45 protein; Belongs to the STXBP/unc-18/SEC1 family. (562 aa)
	Cre-dyf-11	CRE-DYF-11 protein. (551 aa)
	CRE_16677	Uncharacterized protein. (431 aa)
	Cre-rbg-3	CRE-RBG-3 protein. (580 aa)
	Cre-gly-6	Polypeptide N-acetylgalactosaminyltransferase. (693 aa)
	Cre-glr-1	CRE-GLR-1 protein. (965 aa)
	CRE_22415	Uncharacterized protein. (214 aa)
	Cre-acr-9	CRE-ACR-9 protein. (536 aa)
	CRE_21123	Uncharacterized protein. (424 aa)
	Cre-idi-1	CRE-IDI-1 protein. (232 aa)
	CRE_23544	Uncharacterized protein. (83 aa)
	Cre-tsp-13	Tetraspanin. (319 aa)
	CRE_25624	Uncharacterized protein. (273 aa)
	CRE_31233	Uncharacterized protein. (225 aa)
	CRE_31235	Uncharacterized protein. (489 aa)
	Cre-unc-112	CRE-UNC-112 protein. (720 aa)
	CRE_05005	Uncharacterized protein. (259 aa)
	CRE_06737	BTB domain-containing protein. (298 aa)
	Cre-pat-4	CRE-PAT-4 protein. (352 aa)
	Cre-stg-2	CRE-STG-2 protein. (441 aa)
	Cre-nipa-1	CRE-NIPA-1 protein. (203 aa)
	Cre-dom-3	CRE-DOM-3 protein. (318 aa)
	CRE_26730	Uncharacterized protein. (560 aa)
	Cre-pat-2	CRE-PAT-2 protein; Belongs to the integrin alpha chain family. (1225 aa)
	CRE_12209	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (532 aa)
	CRE_14202	Uncharacterized protein. (441 aa)
	Cre-sol-1	CRE-SOL-1 protein. (616 aa)
	CRE_23027	Uncharacterized protein. (302 aa)
	Cre-rap-1	CRE-RAP-1 protein. (188 aa)
	Cre-fbn-1	CRE-FBN-1 protein. (3760 aa)
	CRE_10581	RAI1 domain-containing protein. (323 aa)
	CRE_02609	Uncharacterized protein. (443 aa)
	CRE_20544	Uncharacterized protein. (554 aa)
	CRE_20545	Uncharacterized protein. (132 aa)
	CRE_20547	Uncharacterized protein. (77 aa)
	Cre-tol-1	CRE-TOL-1 protein. (358 aa)
	Cre-lin-12	CRE-LIN-12 protein. (1083 aa)
	Cre-gnrr-8	CRE-GNRR-8 protein. (448 aa)
	CRE_12340	G_PROTEIN_RECEP_F1_2 domain-containing protein. (418 aa)
	CRE_24851	Uncharacterized protein. (358 aa)
	CRE_19567	Uncharacterized protein. (579 aa)
	CRE_21629	Uncharacterized protein. (115 aa)
	CRE_26888	G_PROTEIN_RECEP_F1_2 domain-containing protein. (418 aa)
	CRE_03600	Uncharacterized protein. (66 aa)
	CRE_26032	Uncharacterized protein. (501 aa)
	CRE_19646	Uncharacterized protein. (181 aa)
	Cre-rig-3	CRE-RIG-3 protein. (488 aa)
	Cre-clh-5	Chloride channel protein. (812 aa)
	CRE_01656	Uncharacterized protein. (123 aa)
	CRE_18736	B30.2/SPRY domain-containing protein. (249 aa)
	CRE_18924	Uncharacterized protein. (314 aa)
	CRE_18937	Uncharacterized protein. (221 aa)
	CRE_28046	Uncharacterized protein. (368 aa)
	Cre-daf-16	CRE-DAF-16 protein. (528 aa)
	CRE_27437	Uncharacterized protein. (346 aa)
	CRE_27438	Uncharacterized protein. (1066 aa)
	Cre-glc-4	CRE-GLC-4 protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (573 aa)
	CRE_26313	G_PROTEIN_RECEP_F1_2 domain-containing protein. (494 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_01656	CRE_21629	E3LH15	E3NP70	Uncharacterized protein.	Uncharacterized protein.	0.553
CRE_01656	Cre-abl-1	E3LH15	E3M213	Uncharacterized protein.	Tyrosine-protein kinase.	0.401
CRE_01656	Cre-daf-4	E3LH15	E3LYZ5	Uncharacterized protein.	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.400
CRE_01656	Cre-glr-1	E3LH15	E3MD27	Uncharacterized protein.	CRE-GLR-1 protein.	0.832
CRE_01656	Cre-ina-1	E3LH15	E3LSL7	Uncharacterized protein.	CRE-INA-1 protein; Belongs to the integrin alpha chain family.	0.413
CRE_01656	Cre-nmr-1	E3LH15	E3M4M3	Uncharacterized protein.	CRE-NMR-1 protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.553
CRE_01656	Cre-pat-2	E3LH15	E3N043	Uncharacterized protein.	CRE-PAT-2 protein; Belongs to the integrin alpha chain family.	0.413
CRE_03600	CRE_26313	E3NVL7	E3LRA7	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.703
CRE_03693	Cre-daf-16	E3LXR2	E3LMN9	Uncharacterized protein.	CRE-DAF-16 protein.	0.475
CRE_03693	Cre-nit-1	E3LXR2	E3M8G1	Uncharacterized protein.	CRE-NIT-1 protein.	0.498
CRE_03696	Cre-daf-16	E3LXR6	E3LMN9	Uncharacterized protein.	CRE-DAF-16 protein.	0.475
CRE_03696	Cre-nit-1	E3LXR6	E3M8G1	Uncharacterized protein.	CRE-NIT-1 protein.	0.498
CRE_03697	Cre-daf-16	E3LXR7	E3LMN9	Uncharacterized protein.	CRE-DAF-16 protein.	0.475
CRE_03697	Cre-nit-1	E3LXR7	E3M8G1	Uncharacterized protein.	CRE-NIT-1 protein.	0.498
CRE_04744	CRE_14202	E3LZ08	E3N1M4	Uncharacterized protein.	Uncharacterized protein.	0.508
CRE_05539	Cre-daf-16	E3LZU5	E3LMN9	Uncharacterized protein.	CRE-DAF-16 protein.	0.475
CRE_05539	Cre-nit-1	E3LZU5	E3M8G1	Uncharacterized protein.	CRE-NIT-1 protein.	0.498
CRE_07528	CRE_10228	E3M293	E3M605	G_PROTEIN_RECEP_F3_4 domain-containing protein.	G_PROTEIN_RECEP_F3_4 domain-containing protein; Belongs to the G-protein coupled receptor 3 family.	0.946
CRE_08123	CRE_19646	E3M3I8	E3NWX8	Uncharacterized protein.	Uncharacterized protein.	0.859
CRE_08123	Cre-afd-1	E3M3I8	E3M3I9	Uncharacterized protein.	CRE-AFD-1 protein.	0.917