(10 nodes) BORC complex network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_11970	Uncharacterized protein. (242 aa)
	CRE_13527	Uncharacterized protein. (123 aa)
	CRE_11111	FBA_2 domain-containing protein. (348 aa)
	CRE_20695	Uncharacterized protein. (154 aa)
	CRE_15447	Uncharacterized protein. (126 aa)
	CRE_11113	Uncharacterized protein. (195 aa)
	CRE_06251	FBA_2 domain-containing protein. (193 aa)
	CRE_22237	Uncharacterized protein. (168 aa)
	CRE_27959	KxDL domain-containing protein. (114 aa)
	CRE_14909	KxDL domain-containing protein. (72 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_06251	CRE_11970	E3NTS8	E3M4S4	FBA_2 domain-containing protein.	Uncharacterized protein.	0.688
CRE_06251	CRE_13527	E3NTS8	E3MR48	FBA_2 domain-containing protein.	Uncharacterized protein.	0.523
CRE_06251	CRE_14909	E3NTS8	E3N1U1	FBA_2 domain-containing protein.	KxDL domain-containing protein.	0.752
CRE_06251	CRE_20695	E3NTS8	E3MFE5	FBA_2 domain-containing protein.	Uncharacterized protein.	0.772
CRE_06251	CRE_22237	E3NTS8	E3NRT1	FBA_2 domain-containing protein.	Uncharacterized protein.	0.523
CRE_06251	CRE_27959	E3NTS8	E3NQJ2	FBA_2 domain-containing protein.	KxDL domain-containing protein.	0.752
CRE_11111	CRE_11970	E3M5M2	E3M4S4	FBA_2 domain-containing protein.	Uncharacterized protein.	0.688
CRE_11111	CRE_13527	E3M5M2	E3MR48	FBA_2 domain-containing protein.	Uncharacterized protein.	0.523
CRE_11111	CRE_14909	E3M5M2	E3N1U1	FBA_2 domain-containing protein.	KxDL domain-containing protein.	0.752
CRE_11111	CRE_20695	E3M5M2	E3MFE5	FBA_2 domain-containing protein.	Uncharacterized protein.	0.772
CRE_11111	CRE_22237	E3M5M2	E3NRT1	FBA_2 domain-containing protein.	Uncharacterized protein.	0.523
CRE_11111	CRE_27959	E3M5M2	E3NQJ2	FBA_2 domain-containing protein.	KxDL domain-containing protein.	0.752
CRE_11113	CRE_11970	E3M5M4	E3M4S4	Uncharacterized protein.	Uncharacterized protein.	0.781
CRE_11113	CRE_13527	E3M5M4	E3MR48	Uncharacterized protein.	Uncharacterized protein.	0.706
CRE_11113	CRE_14909	E3M5M4	E3N1U1	Uncharacterized protein.	KxDL domain-containing protein.	0.881
CRE_11113	CRE_20695	E3M5M4	E3MFE5	Uncharacterized protein.	Uncharacterized protein.	0.846
CRE_11113	CRE_22237	E3M5M4	E3NRT1	Uncharacterized protein.	Uncharacterized protein.	0.706
CRE_11113	CRE_27959	E3M5M4	E3NQJ2	Uncharacterized protein.	KxDL domain-containing protein.	0.881
CRE_11970	CRE_06251	E3M4S4	E3NTS8	Uncharacterized protein.	FBA_2 domain-containing protein.	0.688
CRE_11970	CRE_11111	E3M4S4	E3M5M2	Uncharacterized protein.	FBA_2 domain-containing protein.	0.688