(33 nodes) Sterol-sensing domain network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-ptr-11	CRE-PTR-11 protein. (833 aa)
	Cre-ptr-9	CRE-PTR-9 protein. (860 aa)
	Cre-ptr-15	CRE-PTR-15 protein. (844 aa)
	Cre-che-14	CRE-CHE-14 protein. (922 aa)
	Cre-ptc-1	CRE-PTC-1 protein. (1403 aa)
	Cre-ptr-20	CRE-PTR-20 protein. (860 aa)
	Cre-ptr-13	CRE-PTR-13 protein. (848 aa)
	Cre-ptr-18	CRE-PTR-18 protein. (739 aa)
	Cre-ncr-1	CRE-NCR-1 protein. (1382 aa)
	Cre-ptr-4	CRE-PTR-4 protein. (956 aa)
	Cre-ptr-24.1	CRE-PTR-24.1 protein. (893 aa)
	Cre-ptr-12	CRE-PTR-12 protein. (897 aa)
	Cre-ptr-22	CRE-PTR-22 protein. (872 aa)
	Cre-ptr-17	CRE-PTR-17 protein. (900 aa)
	Cre-scp-1	CRE-SCP-1 protein. (1111 aa)
	Cre-ptr-1	CRE-PTR-1 protein. (986 aa)
	Cre-ptr-24.2	CRE-PTR-24.2 protein. (851 aa)
	Cre-ptr-6	CRE-PTR-6 protein. (567 aa)
	Cre-ptr-14	CRE-PTR-14 protein. (870 aa)
	Cre-ptr-23	CRE-PTR-23 protein. (1115 aa)
	Cre-ptr-5	CRE-PTR-5 protein. (1020 aa)
	Cre-ptr-16	CRE-PTR-16 protein. (943 aa)
	Cre-daf-6	CRE-DAF-6 protein. (928 aa)
	Cre-ptr-8	CRE-PTR-8 protein. (907 aa)
	Cre-ptc-3	CRE-PTC-3 protein. (1263 aa)
	CRE_04601	SSD domain-containing protein. (1246 aa)
	Cre-ptr-19	CRE-PTR-19 protein. (1021 aa)
	Cre-ptr-10	CRE-PTR-10 protein. (898 aa)
	Cre-ncr-2	CRE-NCR-2 protein. (963 aa)
	Cre-ptd-2	CRE-PTD-2 protein. (946 aa)
	Cre-ptr-3	CRE-PTR-3 protein. (945 aa)
	Cre-ptr-21	CRE-PTR-21 protein. (912 aa)
	Cre-ptr-2	CRE-PTR-2 protein. (965 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cre-che-14	Cre-daf-6	E3LMK3	E3MC69	CRE-CHE-14 protein.	CRE-DAF-6 protein.	0.844
Cre-che-14	Cre-ptc-1	E3LMK3	E3LG91	CRE-CHE-14 protein.	CRE-PTC-1 protein.	0.428
Cre-daf-6	Cre-che-14	E3MC69	E3LMK3	CRE-DAF-6 protein.	CRE-CHE-14 protein.	0.844
Cre-ptc-1	Cre-che-14	E3LG91	E3LMK3	CRE-PTC-1 protein.	CRE-CHE-14 protein.	0.428
Cre-ptc-1	Cre-ptc-3	E3LG91	E3M0R5	CRE-PTC-1 protein.	CRE-PTC-3 protein.	0.730
Cre-ptc-1	Cre-ptd-2	E3LG91	E3MD84	CRE-PTC-1 protein.	CRE-PTD-2 protein.	0.429
Cre-ptc-3	Cre-ptc-1	E3M0R5	E3LG91	CRE-PTC-3 protein.	CRE-PTC-1 protein.	0.730
Cre-ptd-2	Cre-ptc-1	E3MD84	E3LG91	CRE-PTD-2 protein.	CRE-PTC-1 protein.	0.429
Cre-ptr-1	Cre-ptr-21	E3N563	E3MFN1	CRE-PTR-1 protein.	CRE-PTR-21 protein.	0.419
Cre-ptr-10	Cre-ptr-4	E3LXC1	E3LDR0	CRE-PTR-10 protein.	CRE-PTR-4 protein.	0.474
Cre-ptr-2	Cre-ptr-24.1	E3MG92	E3MJE9	CRE-PTR-2 protein.	CRE-PTR-24.1 protein.	0.531
Cre-ptr-2	Cre-ptr-24.2	E3MG92	E3NA92	CRE-PTR-2 protein.	CRE-PTR-24.2 protein.	0.531
Cre-ptr-21	Cre-ptr-1	E3MFN1	E3N563	CRE-PTR-21 protein.	CRE-PTR-1 protein.	0.419
Cre-ptr-24.1	Cre-ptr-2	E3MJE9	E3MG92	CRE-PTR-24.1 protein.	CRE-PTR-2 protein.	0.531
Cre-ptr-24.2	Cre-ptr-2	E3NA92	E3MG92	CRE-PTR-24.2 protein.	CRE-PTR-2 protein.	0.531
Cre-ptr-4	Cre-ptr-10	E3LDR0	E3LXC1	CRE-PTR-4 protein.	CRE-PTR-10 protein.	0.474