(55 nodes) Nuclear hormone receptor network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_07042	Nuclear receptor domain-containing protein. (325 aa)
	Cre-nhr-100	CRE-NHR-100 protein. (440 aa)
	Cre-nhr-23	CRE-NHR-23 protein. (597 aa)
	Cre-sex-1	CRE-SEX-1 protein. (518 aa)
	Cre-nhr-62	CRE-NHR-62 protein. (515 aa)
	CRE_27544	Uncharacterized protein. (480 aa)
	CRE_09477	Uncharacterized protein. (418 aa)
	CRE_09416	Uncharacterized protein. (590 aa)
	CRE_09282	Uncharacterized protein. (426 aa)
	Cre-nhr-114	CRE-NHR-114 protein. (424 aa)
	Cre-nhr-35	CRE-NHR-35 protein. (489 aa)
	Cre-nhr-173	CRE-NHR-173 protein. (506 aa)
	Cre-nhr-101	CRE-NHR-101 protein. (394 aa)
	Cre-nhr-68	CRE-NHR-68 protein. (399 aa)
	CRE_22475	Uncharacterized protein. (733 aa)
	Cre-nhr-46	CRE-NHR-46 protein. (661 aa)
	Cre-nhr-4	CRE-NHR-4 protein. (495 aa)
	Cre-nhr-1	CRE-NHR-1 protein. (441 aa)
	Cre-nhr-97	CRE-NHR-97 protein. (441 aa)
	Cre-nhr-43	CRE-NHR-43 protein. (458 aa)
	Cre-nhr-14	CRE-NHR-14 protein. (433 aa)
	CRE_20812	Uncharacterized protein. (465 aa)
	CRE_20813	Uncharacterized protein. (409 aa)
	Cre-nhr-25	CRE-NHR-25 protein. (568 aa)
	Cre-nhr-17	CRE-NHR-17 protein. (395 aa)
	CRE_02503	Uncharacterized protein. (645 aa)
	Cre-nhr-64	CRE-NHR-64 protein. (365 aa)
	Cre-nhr-85	CRE-NHR-85 protein. (499 aa)
	Cre-nhr-19	CRE-NHR-19 protein. (440 aa)
	Cre-nhr-122	CRE-NHR-122 protein. (377 aa)
	Cre-unc-55	CRE-UNC-55 protein. (287 aa)
	Cre-nhr-91	CRE-NHR-91 protein. (519 aa)
	CRE_14575	Uncharacterized protein. (429 aa)
	Cre-nhr-67	CRE-NHR-67 protein. (422 aa)
	Cre-nhr-258	CRE-NHR-258 protein. (461 aa)
	Cre-nhr-31	CRE-NHR-31 protein. (578 aa)
	Cre-nhr-105	CRE-NHR-105 protein. (430 aa)
	CRE_07033	Uncharacterized protein. (485 aa)
	CRE_21594	Nuclear receptor domain-containing protein. (265 aa)
	CRE_30546	Uncharacterized protein. (533 aa)
	CRE_16529	Uncharacterized protein. (225 aa)
	CRE_22212	Uncharacterized protein. (495 aa)
	CRE_09911	Uncharacterized protein. (441 aa)
	CRE_21661	Nuclear receptor domain-containing protein. (355 aa)
	Cre-nhr-38	CRE-NHR-38 protein. (325 aa)
	CRE_10779	Uncharacterized protein. (455 aa)
	Cre-nhr-22	CRE-NHR-22 protein. (581 aa)
	Cre-nhr-10	CRE-NHR-10 protein. (413 aa)
	Cre-nhr-47	CRE-NHR-47 protein. (585 aa)
	Cre-nhr-260	CRE-NHR-260 protein. (416 aa)
	Cre-nhr-175	CRE-NHR-175 protein. (369 aa)
	Cre-nhr-119	CRE-NHR-119 protein. (723 aa)
	Cre-nhr-88	CRE-NHR-88 protein. (591 aa)
	Cre-nhr-69	CRE-NHR-69 protein. (372 aa)
	Cre-nhr-49	CRE-NHR-49 protein. (504 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_07042	CRE_09282	E3NGW4	E3LHY6	Nuclear receptor domain-containing protein.	Uncharacterized protein.	0.493
CRE_07042	CRE_14575	E3NGW4	E3M9L6	Nuclear receptor domain-containing protein.	Uncharacterized protein.	0.650
CRE_07042	CRE_20812	E3NGW4	E3MUY2	Nuclear receptor domain-containing protein.	Uncharacterized protein.	0.568
CRE_07042	CRE_20813	E3NGW4	E3MUY3	Nuclear receptor domain-containing protein.	Uncharacterized protein.	0.602
CRE_07042	CRE_21594	E3NGW4	E3NKW9	Nuclear receptor domain-containing protein.	Nuclear receptor domain-containing protein.	0.553
CRE_07042	CRE_22475	E3NGW4	E3MDV4	Nuclear receptor domain-containing protein.	Uncharacterized protein.	0.601
CRE_07042	Cre-nhr-105	E3NGW4	E3NE99	Nuclear receptor domain-containing protein.	CRE-NHR-105 protein.	0.518
CRE_07042	Cre-nhr-25	E3NGW4	E3MVJ2	Nuclear receptor domain-containing protein.	CRE-NHR-25 protein.	0.568
CRE_09282	CRE_07042	E3LHY6	E3NGW4	Uncharacterized protein.	Nuclear receptor domain-containing protein.	0.493
CRE_09282	CRE_14575	E3LHY6	E3M9L6	Uncharacterized protein.	Uncharacterized protein.	0.511
CRE_09282	CRE_20813	E3LHY6	E3MUY3	Uncharacterized protein.	Uncharacterized protein.	0.493
CRE_09282	CRE_22475	E3LHY6	E3MDV4	Uncharacterized protein.	Uncharacterized protein.	0.502
CRE_09282	Cre-nhr-173	E3LHY6	E3LDE5	Uncharacterized protein.	CRE-NHR-173 protein.	0.459
CRE_09282	Cre-nhr-38	E3LHY6	E3NTC7	Uncharacterized protein.	CRE-NHR-38 protein.	0.490
CRE_09282	Cre-nhr-49	E3LHY6	E3M3B9	Uncharacterized protein.	CRE-NHR-49 protein.	0.472
CRE_09282	Cre-nhr-64	E3LHY6	E3MYE1	Uncharacterized protein.	CRE-NHR-64 protein.	0.438
CRE_09282	Cre-nhr-69	E3LHY6	E3M3B7	Uncharacterized protein.	CRE-NHR-69 protein.	0.415
CRE_09282	Cre-nhr-85	E3LHY6	E3N2P9	Uncharacterized protein.	CRE-NHR-85 protein.	0.527
CRE_09282	Cre-unc-55	E3LHY6	E3NCM1	Uncharacterized protein.	CRE-UNC-55 protein.	0.460
CRE_09477	CRE_14575	E3LJ63	E3M9L6	Uncharacterized protein.	Uncharacterized protein.	0.415