52 items (Caenorhabditis remanei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-cdc-48.1	CRE-CDC-48.1 protein; Belongs to the AAA ATPase family. (809 aa)
	CRE_01941	Uncharacterized protein; Belongs to the AAA ATPase family. (442 aa)
	Cre-pch-2	CRE-PCH-2 protein; Belongs to the AAA ATPase family. (442 aa)
	Cre-cdc-48.2	CRE-CDC-48.2 protein; Belongs to the AAA ATPase family. (812 aa)
	CRE_02019	AAA domain-containing protein; Belongs to the AAA ATPase family. (438 aa)
	CRE_09394	AAA domain-containing protein; Belongs to the AAA ATPase family. (416 aa)
	Cre-prx-6	CRE-PRX-6 protein. (738 aa)
	Cre-figl-1	CRE-FIGL-1 protein; Belongs to the AAA ATPase family. (595 aa)
	Cre-spg-7	CRE-SPG-7 protein. (798 aa)
	mei-1	Meiotic spindle formation protein mei-1; Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays. This activity may promote rapid reorganization of cellular microtubule arrays. Required specifically for meiotic spindle formation in the female germline; the presence of this protein is inimical to the formation of mitotic spindles. (537 aa)
	Cre-rpt-5	CRE-RPT-5 protein; Belongs to the AAA ATPase family. (430 aa)
	CRE_28176	Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family. (998 aa)
	CRE_28562	Uncharacterized protein; Belongs to the AAA ATPase family. (309 aa)
	CRE_28272	AAA domain-containing protein; Belongs to the AAA ATPase family. (409 aa)
	Cre-rpt-1	CRE-RPT-1 protein; Belongs to the AAA ATPase family. (435 aa)
	Cre-rpt-2	CRE-RPT-2 protein; Belongs to the AAA ATPase family. (443 aa)
	CRE_03184	AAA domain-containing protein; Belongs to the AAA ATPase family. (443 aa)
	Cre-vps-4	CRE-VPS-4 protein; Belongs to the AAA ATPase family. (430 aa)
	Cre-mei-1	Meiotic spindle formation protein mei-1; Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays. This activity may promote rapid reorganization of cellular microtubule arrays. Required specifically for meiotic spindle formation in the female germline; the presence of this protein is inimical to the formation of mitotic spindles. (476 aa)
	Cre-ymel-1	CRE-YMEL-1 protein. (735 aa)
	CRE_04614	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (665 aa)
	CRE_14579	AAA domain-containing protein; Belongs to the AAA ATPase family. (404 aa)
	Cre-rfc-4	CRE-RFC-4 protein. (362 aa)
	CRE_24403	Lon N-terminal domain-containing protein. (362 aa)
	CRE_24404	Lon proteolytic domain-containing protein; Belongs to the peptidase S16 family. (392 aa)
	Cre-rfc-2	CRE-RFC-2 protein. (329 aa)
	Cre-cdc-6	Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family. (553 aa)
	CRE_29990	AAA domain-containing protein. (433 aa)
	CRE_29903	AAA domain-containing protein; Belongs to the AAA ATPase family. (352 aa)
	Cre-mac-1	CRE-MAC-1 protein. (841 aa)
	Cre-rfc-1	Replication factor C subunit 1. (835 aa)
	CRE_06764	AAA domain-containing protein. (365 aa)
	Cre-lex-1	CRE-LEX-1 protein. (1289 aa)
	Cre-nsf-1	CRE-NSF-1 protein. (799 aa)
	Cre-prx-1	CRE-PRX-1 protein; Belongs to the AAA ATPase family. (362 aa)
	CRE_20862	AAA domain-containing protein. (646 aa)
	CRE_23600	AAA domain-containing protein; Belongs to the AAA ATPase family. (329 aa)
	Cre-cdc-48.3	CRE-CDC-48.3 protein. (728 aa)
	CRE_30105	Uncharacterized protein. (523 aa)
	CRE_07729	ATPase_AAA_core domain-containing protein. (597 aa)
	Cre-rpt-4	CRE-RPT-4 protein; Belongs to the AAA ATPase family. (492 aa)
	CRE_24161	Uncharacterized protein. (420 aa)
	Cre-spas-1	CRE-SPAS-1 protein; Belongs to the AAA ATPase family. (447 aa)
	Cre-rpt-6	CRE-RPT-6 protein; Belongs to the AAA ATPase family. (408 aa)
	Cre-ppgn-1	CRE-PPGN-1 protein. (931 aa)
	CRE_23158	Uncharacterized protein. (638 aa)
	Cre-atad-3	CRE-ATAD-3 protein. (495 aa)
	CRE_30577	ATPase_AAA_core domain-containing protein. (405 aa)
	CRE_14423	AAA domain-containing protein; Belongs to the AAA ATPase family. (364 aa)
	CRE_23295	Uncharacterized protein. (436 aa)
	CRE_21716	ClpB_D2-small domain-containing protein. (179 aa)
	CRE_30647	Uncharacterized protein; Belongs to the ClpA/ClpB family. (890 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_01941	CRE_14423	E3LGE9	E3NRW9	Uncharacterized protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.457
CRE_01941	CRE_23158	E3LGE9	E3NHT7	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.587
CRE_01941	CRE_23295	E3LGE9	E3NWN3	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.587
CRE_01941	CRE_24403	E3LGE9	E3MFT7	Uncharacterized protein; Belongs to the AAA ATPase family.	Lon N-terminal domain-containing protein.	0.617
CRE_01941	CRE_24404	E3LGE9	E3MFT9	Uncharacterized protein; Belongs to the AAA ATPase family.	Lon proteolytic domain-containing protein; Belongs to the peptidase S16 family.	0.617
CRE_01941	CRE_28176	E3LGE9	E3LMQ8	Uncharacterized protein; Belongs to the AAA ATPase family.	Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family.	0.617
CRE_01941	CRE_29903	E3LGE9	E3MM38	Uncharacterized protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.457
CRE_01941	CRE_30105	E3LGE9	E3MYH8	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.587
CRE_02019	CRE_03184	E3LGV3	E3LX06	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.992
CRE_02019	CRE_04614	E3LGV3	E3LZF7	AAA domain-containing protein; Belongs to the AAA ATPase family.	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.	0.721
CRE_02019	CRE_07729	E3LGV3	E3MZV7	AAA domain-containing protein; Belongs to the AAA ATPase family.	ATPase_AAA_core domain-containing protein.	0.633
CRE_02019	CRE_09394	E3LGV3	E3LIK9	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.992
CRE_02019	CRE_14423	E3LGV3	E3NRW9	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.682
CRE_02019	CRE_14579	E3LGV3	E3M9M3	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.981
CRE_02019	CRE_20862	E3LGV3	E3MUZ1	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein.	0.633
CRE_02019	CRE_23600	E3LGV3	E3MVR7	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.981
CRE_02019	CRE_24161	E3LGV3	E3N452	AAA domain-containing protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.665
CRE_02019	CRE_28272	E3LGV3	E3LN27	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.983
CRE_02019	CRE_28562	E3LGV3	E3LN24	AAA domain-containing protein; Belongs to the AAA ATPase family.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.984
CRE_02019	CRE_29903	E3LGV3	E3MM38	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.680