(44 nodes) K Homology domain, type 1 network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_23698	Uncharacterized protein. (273 aa)
	CRE_02606	KH domain-containing protein. (375 aa)
	CRE_08549	KH domain-containing protein. (369 aa)
	CRE_28700	Uncharacterized protein. (586 aa)
	CRE_28699	Uncharacterized protein. (1472 aa)
	CRE_28673	Uncharacterized protein. (329 aa)
	CRE_28671	Uncharacterized protein. (349 aa)
	CRE_28670	Uncharacterized protein. (304 aa)
	CRE_14300	KH domain-containing protein. (461 aa)
	CRE_16415	KH domain-containing protein. (370 aa)
	CRE_28190	KH domain-containing protein. (324 aa)
	Cre-asd-2	CRE-ASD-2 protein. (444 aa)
	CRE_30686	Uncharacterized protein. (597 aa)
	CRE_29640	Serpentine receptor class gamma; Belongs to the nematode receptor-like protein srg family. (721 aa)
	Cre-exos-3	CRE-EXOS-3 protein. (271 aa)
	CRE_02951	Tudor domain-containing protein. (519 aa)
	Cre-mex-3	CRE-MEX-3 protein. (453 aa)
	CRE_06433	Uncharacterized protein. (476 aa)
	CRE_11086	Uncharacterized protein. (2702 aa)
	CRE_10186	KH domain-containing protein. (252 aa)
	CRE_13901	KH domain-containing protein. (524 aa)
	CRE_16715	Uncharacterized protein. (751 aa)
	CRE_20357	Uncharacterized protein. (856 aa)
	CRE_21277	Uncharacterized protein. (441 aa)
	CRE_21287	Uncharacterized protein. (1058 aa)
	CRE_28669	Uncharacterized protein. (373 aa)
	CRE_28701	Uncharacterized protein. (489 aa)
	CRE_19589	ANK_REP_REGION domain-containing protein. (1817 aa)
	CRE_21053	KH domain-containing protein. (249 aa)
	CRE_02717	Uncharacterized protein. (273 aa)
	CRE_09883	KH domain-containing protein. (173 aa)
	CRE_23168	KH domain-containing protein. (472 aa)
	Cre-pes-4	CRE-PES-4 protein. (436 aa)
	CRE_28702	Uncharacterized protein. (569 aa)
	CRE_28807	Uncharacterized protein. (335 aa)
	Cre-sfa-1	CRE-SFA-1 protein. (701 aa)
	CRE_06751	Uncharacterized protein. (2057 aa)
	Cre-exos-2	CRE-EXOS-2 protein. (303 aa)
	Cre-gld-1	CRE-GLD-1 protein. (476 aa)
	CRE_23554	Uncharacterized protein. (180 aa)
	CRE_07704	Uncharacterized protein. (1219 aa)
	CRE_08513	KH domain-containing protein. (364 aa)
	CRE_09257	Uncharacterized protein. (1192 aa)
	CRE_23697	Uncharacterized protein. (580 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_02717	CRE_06433	E3NP86	E3M0W4	Uncharacterized protein.	Uncharacterized protein.	0.688
CRE_02717	CRE_16715	E3NP86	E3MAM3	Uncharacterized protein.	Uncharacterized protein.	0.688
CRE_02717	CRE_23697	E3NP86	E3N9B4	Uncharacterized protein.	Uncharacterized protein.	0.688
CRE_02717	CRE_28699	E3NP86	E3MK30	Uncharacterized protein.	Uncharacterized protein.	0.688
CRE_02717	CRE_28700	E3NP86	E3MK31	Uncharacterized protein.	Uncharacterized protein.	0.688
CRE_02717	CRE_28701	E3NP86	E3MK32	Uncharacterized protein.	Uncharacterized protein.	0.688
CRE_02717	CRE_28702	E3NP86	E3MK33	Uncharacterized protein.	Uncharacterized protein.	0.688
CRE_02717	CRE_30686	E3NP86	E3LTR1	Uncharacterized protein.	Uncharacterized protein.	0.688
CRE_02717	Cre-exos-2	E3NP86	E3MS76	Uncharacterized protein.	CRE-EXOS-2 protein.	0.543
CRE_02717	Cre-exos-3	E3NP86	E3LW16	Uncharacterized protein.	CRE-EXOS-3 protein.	0.997
CRE_02951	CRE_10186	E3LWV7	E3M6S0	Tudor domain-containing protein.	KH domain-containing protein.	0.573
CRE_02951	CRE_11086	E3LWV7	E3M5G1	Tudor domain-containing protein.	Uncharacterized protein.	0.504
CRE_02951	CRE_13901	E3LWV7	E3M8L5	Tudor domain-containing protein.	KH domain-containing protein.	0.426
CRE_02951	CRE_16715	E3LWV7	E3MAM3	Tudor domain-containing protein.	Uncharacterized protein.	0.549
CRE_02951	CRE_19589	E3LWV7	E3NRG1	Tudor domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.504
CRE_02951	CRE_20357	E3LWV7	E3MCX9	Tudor domain-containing protein.	Uncharacterized protein.	0.592
CRE_02951	CRE_21053	E3LWV7	E3NPN0	Tudor domain-containing protein.	KH domain-containing protein.	0.535
CRE_02951	CRE_30686	E3LWV7	E3LTR1	Tudor domain-containing protein.	Uncharacterized protein.	0.505
CRE_02951	Cre-pes-4	E3LWV7	E3NGC2	Tudor domain-containing protein.	CRE-PES-4 protein.	0.588
CRE_06433	CRE_02717	E3M0W4	E3NP86	Uncharacterized protein.	Uncharacterized protein.	0.688