(88 nodes) Immunoglobulin-like domain network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_31104	Uncharacterized protein. (13106 aa)
	CRE_02785	Ig-like domain-containing protein. (146 aa)
	CRE_07964	Uncharacterized protein. (469 aa)
	CRE_12430	Uncharacterized protein. (256 aa)
	CRE_31611	Uncharacterized protein. (464 aa)
	CRE_18330	Ig-like domain-containing protein. (372 aa)
	CRE_22221	Ig-like domain-containing protein. (451 aa)
	Cre-zig-7	CRE-ZIG-7 protein. (255 aa)
	CRE_10660	Uncharacterized protein. (881 aa)
	CRE_30466	Uncharacterized protein. (254 aa)
	CRE_30431	Ig-like domain-containing protein. (197 aa)
	CRE_25792	Uncharacterized protein. (1378 aa)
	CRE_19341	Uncharacterized protein. (2619 aa)
	CRE_05959	Uncharacterized protein. (253 aa)
	Cre-rig-1	CRE-RIG-1 protein. (1080 aa)
	Cre-wrk-1	CRE-WRK-1 protein. (443 aa)
	CRE_15583	Ig-like domain-containing protein. (376 aa)
	Cre-unc-22	CRE-UNC-22 protein. (7364 aa)
	Cre-unc-5	CRE-UNC-5 protein. (920 aa)
	Cre-oig-1	CRE-OIG-1 protein. (94 aa)
	Cre-oig-3	CRE-OIG-3 protein. (151 aa)
	CRE_30039	Uncharacterized protein. (1571 aa)
	Cre-lad-2	CRE-LAD-2 protein. (704 aa)
	CRE_29942	Uncharacterized protein. (493 aa)
	CRE_29999	Uncharacterized protein. (1163 aa)
	Cre-cam-1	CRE-CAM-1 protein. (923 aa)
	CRE_24984	I-set domain-containing protein. (417 aa)
	Cre-unc-52	CRE-UNC-52 protein. (3425 aa)
	Cre-unc-73	CRE-UNC-73 protein. (2483 aa)
	CRE_24008	Uncharacterized protein. (809 aa)
	Cre-unc-89	CRE-UNC-89 protein. (4709 aa)
	CRE_24006	Uncharacterized protein. (479 aa)
	CRE_24005	Uncharacterized protein. (1571 aa)
	CRE_21283	Ig-like domain-containing protein. (1391 aa)
	CRE_22356	Uncharacterized protein. (252 aa)
	CRE_15414	Ig-like domain-containing protein. (725 aa)
	Cre-syg-2	CRE-SYG-2 protein. (1277 aa)
	CRE_16676	Uncharacterized protein. (1247 aa)
	CRE_16675	Uncharacterized protein. (1105 aa)
	Cre-him-4	CRE-HIM-4 protein. (2924 aa)
	Cre-ncam-1	CRE-NCAM-1 protein. (970 aa)
	Cre-igcm-1	CRE-IGCM-1 protein. (1063 aa)
	Cre-sax-7	CRE-SAX-7 protein. (1340 aa)
	Cre-rig-4	CRE-RIG-4 protein. (2353 aa)
	CRE_10976	Ig-like domain-containing protein. (481 aa)
	Cre-clr-1	CRE-CLR-1 protein. (1473 aa)
	Cre-rig-6	CRE-RIG-6 protein. (1216 aa)
	Cre-rig-5	CRE-RIG-5 protein. (379 aa)
	Cre-zig-1	CRE-ZIG-1 protein. (265 aa)
	Cre-egl-15	CRE-EGL-15 protein. (1166 aa)
	Cre-syg-1	CRE-SYG-1 protein. (744 aa)
	Cre-ver-3	CRE-VER-3 protein. (1222 aa)
	Cre-pxn-2	CRE-PXN-2 protein. (1360 aa)
	Cre-igcm-3	CRE-IGCM-3 protein. (623 aa)
	CRE_07524	Uncharacterized protein. (537 aa)
	CRE_07506	Uncharacterized protein. (263 aa)
	Cre-pxn-1	CRE-PXN-1 protein. (1317 aa)
	Cre-zig-5	CRE-ZIG-5 protein. (258 aa)
	CRE_03960	Ig-like domain-containing protein. (490 aa)
	Cre-mab-20	CRE-MAB-20 protein; Belongs to the semaphorin family. (659 aa)
	CRE_03646	Ig-like domain-containing protein. (285 aa)
	Cre-unc-40	CRE-UNC-40 protein. (1432 aa)
	CRE_03047	Ig-like domain-containing protein. (170 aa)
	CRE_29771	Uncharacterized protein. (1045 aa)
	CRE_31105	Uncharacterized protein. (3252 aa)
	Cre-ttn-1	CRE-TTN-1 protein. (2780 aa)
	Cre-glc-3	CRE-GLC-3 protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (502 aa)
	CRE_25108	Ig-like domain-containing protein. (772 aa)
	Cre-dig-1	CRE-DIG-1 protein. (13921 aa)
	Cre-oig-4	CRE-OIG-4 protein. (155 aa)
	CRE_26544	Uncharacterized protein. (325 aa)
	CRE_26245	Ig-like domain-containing protein. (303 aa)
	CRE_26198	Uncharacterized protein. (638 aa)
	CRE_28122	Ig-like domain-containing protein. (898 aa)
	CRE_18890	Ig-like domain-containing protein. (300 aa)
	Cre-ketn-1	CRE-KETN-1 protein. (4991 aa)
	CRE_18942	Uncharacterized protein. (439 aa)
	Cre-ptp-3	CRE-PTP-3 protein. (2284 aa)
	Cre-oig-2	CRE-OIG-2 protein. (108 aa)
	Cre-sax-3	CRE-SAX-3 protein. (697 aa)
	Cre-zig-6	CRE-ZIG-6 protein. (242 aa)
	Cre-lev-9	CRE-LEV-9 protein. (1381 aa)
	Cre-igcm-2	CRE-IGCM-2 protein. (814 aa)
	Cre-rig-3	CRE-RIG-3 protein. (488 aa)
	Cre-zig-4	CRE-ZIG-4 protein. (265 aa)
	CRE_00492	Uncharacterized protein. (271 aa)
	Cre-zig-3	CRE-ZIG-3 protein. (247 aa)
	Cre-dim-1	CRE-DIM-1 protein. (324 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_00492	CRE_03960	E3LCB1	E3LY23	Uncharacterized protein.	Ig-like domain-containing protein.	0.429
CRE_00492	CRE_07524	E3LCB1	E3M287	Uncharacterized protein.	Uncharacterized protein.	0.617
CRE_00492	CRE_12430	E3LCB1	E3NRV8	Uncharacterized protein.	Uncharacterized protein.	0.553
CRE_00492	CRE_15414	E3LCB1	E3MC93	Uncharacterized protein.	Ig-like domain-containing protein.	0.429
CRE_00492	CRE_16675	E3LCB1	E3MB16	Uncharacterized protein.	Uncharacterized protein.	0.617
CRE_00492	CRE_16676	E3LCB1	E3MB17	Uncharacterized protein.	Uncharacterized protein.	0.617
CRE_00492	CRE_24005	E3LCB1	E3MGF5	Uncharacterized protein.	Uncharacterized protein.	0.768
CRE_00492	CRE_24006	E3LCB1	E3MGF6	Uncharacterized protein.	Uncharacterized protein.	0.768
CRE_00492	CRE_24008	E3LCB1	E3MGF9	Uncharacterized protein.	Uncharacterized protein.	0.768
CRE_00492	CRE_25108	E3LCB1	E3LSY4	Uncharacterized protein.	Ig-like domain-containing protein.	0.429
CRE_00492	CRE_26544	E3LCB1	E3LR59	Uncharacterized protein.	Uncharacterized protein.	0.627
CRE_00492	CRE_29942	E3LCB1	E3MMA2	Uncharacterized protein.	Uncharacterized protein.	0.553
CRE_00492	CRE_30431	E3LCB1	E3NDW4	Uncharacterized protein.	Ig-like domain-containing protein.	0.617
CRE_00492	CRE_31611	E3LCB1	E3NRU7	Uncharacterized protein.	Uncharacterized protein.	0.553
CRE_00492	Cre-cam-1	E3LCB1	E3MHY0	Uncharacterized protein.	CRE-CAM-1 protein.	0.426
CRE_00492	Cre-dim-1	E3LCB1	E3LC84	Uncharacterized protein.	CRE-DIM-1 protein.	0.617
CRE_00492	Cre-him-4	E3LCB1	E3MB14	Uncharacterized protein.	CRE-HIM-4 protein.	0.617
CRE_00492	Cre-igcm-1	E3LCB1	E3MA57	Uncharacterized protein.	CRE-IGCM-1 protein.	0.795
CRE_00492	Cre-lad-2	E3LCB1	E3MMA4	Uncharacterized protein.	CRE-LAD-2 protein.	0.553
CRE_00492	Cre-ncam-1	E3LCB1	E3MA82	Uncharacterized protein.	CRE-NCAM-1 protein.	0.617