(8 nodes) EGF-like, conserved site network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-glp-1	CRE-GLP-1 protein. (1308 aa)
	Cre-mua-3	CRE-MUA-3 protein. (3860 aa)
	CRE_12712	Uncharacterized protein. (374 aa)
	Cre-crb-1	CRE-CRB-1 protein. (1719 aa)
	CRE_15303	Uncharacterized protein. (574 aa)
	Cre-mup-4	CRE-MUP-4 protein. (2161 aa)
	CRE_27801	Uncharacterized protein. (1349 aa)
	CRE_01394	Uncharacterized protein. (1405 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_15303	CRE_27801	E3MC36	E3N5J9	Uncharacterized protein.	Uncharacterized protein.	0.425
CRE_27801	CRE_15303	E3N5J9	E3MC36	Uncharacterized protein.	Uncharacterized protein.	0.425
CRE_27801	Cre-crb-1	E3N5J9	E3MAM0	Uncharacterized protein.	CRE-CRB-1 protein.	0.436
CRE_27801	Cre-glp-1	E3N5J9	E3NFX9	Uncharacterized protein.	CRE-GLP-1 protein.	0.894
CRE_27801	Cre-mua-3	E3N5J9	E3LRX9	Uncharacterized protein.	CRE-MUA-3 protein.	0.436
CRE_27801	Cre-mup-4	E3N5J9	E3MWG7	Uncharacterized protein.	CRE-MUP-4 protein.	0.436
Cre-crb-1	CRE_27801	E3MAM0	E3N5J9	CRE-CRB-1 protein.	Uncharacterized protein.	0.436
Cre-glp-1	CRE_27801	E3NFX9	E3N5J9	CRE-GLP-1 protein.	Uncharacterized protein.	0.894
Cre-mua-3	CRE_27801	E3LRX9	E3N5J9	CRE-MUA-3 protein.	Uncharacterized protein.	0.436
Cre-mua-3	Cre-mup-4	E3LRX9	E3MWG7	CRE-MUA-3 protein.	CRE-MUP-4 protein.	0.657
Cre-mup-4	CRE_27801	E3MWG7	E3N5J9	CRE-MUP-4 protein.	Uncharacterized protein.	0.436
Cre-mup-4	Cre-mua-3	E3MWG7	E3LRX9	CRE-MUP-4 protein.	CRE-MUA-3 protein.	0.657