(20 nodes) Amino acid transporter, transmembrane domain network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-unc-47	CRE-UNC-47 protein. (484 aa)
	CRE_29593	Aa_trans domain-containing protein. (485 aa)
	CRE_03725	Aa_trans domain-containing protein. (643 aa)
	CRE_04556	Aa_trans domain-containing protein. (488 aa)
	CRE_13895	Aa_trans domain-containing protein. (509 aa)
	CRE_12203	Aa_trans domain-containing protein. (460 aa)
	CRE_13521	Aa_trans domain-containing protein. (486 aa)
	CRE_12883	Aa_trans domain-containing protein. (519 aa)
	CRE_24461	Aa_trans domain-containing protein. (459 aa)
	CRE_15931	Aa_trans domain-containing protein. (470 aa)
	CRE_12752	Uncharacterized protein. (628 aa)
	CRE_26143	Aa_trans domain-containing protein. (496 aa)
	CRE_26213	Aa_trans domain-containing protein. (320 aa)
	CRE_04558	Aa_trans domain-containing protein. (517 aa)
	CRE_07292	Aa_trans domain-containing protein. (493 aa)
	CRE_20656	Aa_trans domain-containing protein. (279 aa)
	CRE_03574	Uncharacterized protein. (341 aa)
	CRE_20086	Aa_trans domain-containing protein. (426 aa)
	CRE_18131	Aa_trans domain-containing protein. (425 aa)
	CRE_26214	Aa_trans domain-containing protein. (174 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_03725	CRE_18131	E3LXW9	E3N336	Aa_trans domain-containing protein.	Aa_trans domain-containing protein.	0.506
CRE_03725	CRE_24461	E3LXW9	E3MFR3	Aa_trans domain-containing protein.	Aa_trans domain-containing protein.	0.506
CRE_12203	CRE_12752	E3N089	E3M7L7	Aa_trans domain-containing protein.	Uncharacterized protein.	0.753
CRE_12203	CRE_20656	E3N089	E3NU83	Aa_trans domain-containing protein.	Aa_trans domain-containing protein.	0.753
CRE_12752	CRE_12203	E3M7L7	E3N089	Uncharacterized protein.	Aa_trans domain-containing protein.	0.753
CRE_12752	CRE_18131	E3M7L7	E3N336	Uncharacterized protein.	Aa_trans domain-containing protein.	0.775
CRE_18131	CRE_03725	E3N336	E3LXW9	Aa_trans domain-containing protein.	Aa_trans domain-containing protein.	0.506
CRE_18131	CRE_12752	E3N336	E3M7L7	Aa_trans domain-containing protein.	Uncharacterized protein.	0.775
CRE_18131	CRE_20656	E3N336	E3NU83	Aa_trans domain-containing protein.	Aa_trans domain-containing protein.	0.775
CRE_20656	CRE_12203	E3NU83	E3N089	Aa_trans domain-containing protein.	Aa_trans domain-containing protein.	0.753
CRE_20656	CRE_18131	E3NU83	E3N336	Aa_trans domain-containing protein.	Aa_trans domain-containing protein.	0.775
CRE_24461	CRE_03725	E3MFR3	E3LXW9	Aa_trans domain-containing protein.	Aa_trans domain-containing protein.	0.506