13 items (Caenorhabditis remanei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-rpl-14	CRE-RPL-14 protein. (135 aa)
	Cre-rpl-6	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (217 aa)
	CRE_29504	KOW domain-containing protein. (278 aa)
	Cre-iff-2	Eukaryotic translation initiation factor 5A. (161 aa)
	Cre-rpl-26	CRE-RPL-26 protein. (142 aa)
	Cre-rpl-2	CRE-RPL-2 protein. (260 aa)
	Cre-spt-5	Transcription elongation factor SPT5. (1210 aa)
	CRE_15485	Uncharacterized protein. (698 aa)
	CRE_05232	Ribosomal_L2_C domain-containing protein. (321 aa)
	CRE_20631	Uncharacterized protein. (562 aa)
	Cre-iff-1	Eukaryotic translation initiation factor 5A. (162 aa)
	Cre-rps-4	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (259 aa)
	CRE_28311	Kin17_mid domain-containing protein. (405 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_05232	CRE_29504	E3NGT7	E3LVE0	Ribosomal_L2_C domain-containing protein.	KOW domain-containing protein.	0.999
CRE_05232	Cre-iff-1	E3NGT7	E3LS88	Ribosomal_L2_C domain-containing protein.	Eukaryotic translation initiation factor 5A.	0.960
CRE_05232	Cre-iff-2	E3NGT7	E3LGF5	Ribosomal_L2_C domain-containing protein.	Eukaryotic translation initiation factor 5A.	0.960
CRE_05232	Cre-rpl-14	E3NGT7	E3M3V3	Ribosomal_L2_C domain-containing protein.	CRE-RPL-14 protein.	0.989
CRE_05232	Cre-rpl-26	E3NGT7	E3LGD1	Ribosomal_L2_C domain-containing protein.	CRE-RPL-26 protein.	0.994
CRE_05232	Cre-rpl-6	E3NGT7	E3LSX9	Ribosomal_L2_C domain-containing protein.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.989
CRE_05232	Cre-rps-4	E3NGT7	E3M726	Ribosomal_L2_C domain-containing protein.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.987
CRE_29504	CRE_05232	E3LVE0	E3NGT7	KOW domain-containing protein.	Ribosomal_L2_C domain-containing protein.	0.999
CRE_29504	Cre-iff-1	E3LVE0	E3LS88	KOW domain-containing protein.	Eukaryotic translation initiation factor 5A.	0.954
CRE_29504	Cre-iff-2	E3LVE0	E3LGF5	KOW domain-containing protein.	Eukaryotic translation initiation factor 5A.	0.954
CRE_29504	Cre-rpl-14	E3LVE0	E3M3V3	KOW domain-containing protein.	CRE-RPL-14 protein.	0.991
CRE_29504	Cre-rpl-2	E3LVE0	E3MF85	KOW domain-containing protein.	CRE-RPL-2 protein.	0.994
CRE_29504	Cre-rpl-6	E3LVE0	E3LSX9	KOW domain-containing protein.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.991
CRE_29504	Cre-rps-4	E3LVE0	E3M726	KOW domain-containing protein.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.985
Cre-iff-1	CRE_05232	E3LS88	E3NGT7	Eukaryotic translation initiation factor 5A.	Ribosomal_L2_C domain-containing protein.	0.960
Cre-iff-1	CRE_29504	E3LS88	E3LVE0	Eukaryotic translation initiation factor 5A.	KOW domain-containing protein.	0.954
Cre-iff-1	Cre-iff-2	E3LS88	E3LGF5	Eukaryotic translation initiation factor 5A.	Eukaryotic translation initiation factor 5A.	0.918
Cre-iff-1	Cre-rpl-14	E3LS88	E3M3V3	Eukaryotic translation initiation factor 5A.	CRE-RPL-14 protein.	0.985
Cre-iff-1	Cre-rpl-2	E3LS88	E3MF85	Eukaryotic translation initiation factor 5A.	CRE-RPL-2 protein.	0.973
Cre-iff-1	Cre-rpl-26	E3LS88	E3LGD1	Eukaryotic translation initiation factor 5A.	CRE-RPL-26 protein.	0.969