(63 nodes) Protein-tyrosine phosphatase, active site network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-mtm-3	CRE-MTM-3 protein. (952 aa)
	CRE_29853	Uncharacterized protein. (538 aa)
	CRE_02863	Uncharacterized protein. (1508 aa)
	CRE_03151	Uncharacterized protein. (361 aa)
	CRE_02960	Uncharacterized protein. (226 aa)
	CRE_03656	Uncharacterized protein. (496 aa)
	CRE_03702	Uncharacterized protein. (296 aa)
	CRE_20928	Uncharacterized protein. (1440 aa)
	CRE_30426	Uncharacterized protein. (1185 aa)
	CRE_13711	Uncharacterized protein. (469 aa)
	CRE_03455	Uncharacterized protein. (1217 aa)
	CRE_03456	Uncharacterized protein. (1133 aa)
	CRE_20558	Uncharacterized protein. (485 aa)
	Cre-mtm-1	CRE-MTM-1 protein. (592 aa)
	Cre-daf-18	CRE-DAF-18 protein. (432 aa)
	CRE_11552	Uncharacterized protein. (362 aa)
	CRE_11553	Uncharacterized protein. (460 aa)
	CRE_18304	Uncharacterized protein. (627 aa)
	CRE_10741	Uncharacterized protein. (381 aa)
	CRE_29392	Uncharacterized protein. (396 aa)
	Cre-ptp-1	CRE-PTP-1 protein. (1038 aa)
	CRE_25309	TYR_PHOSPHATASE_2 domain-containing protein. (365 aa)
	CRE_25187	Uncharacterized protein. (529 aa)
	Cre-ptp-2	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (666 aa)
	CRE_28627	Uncharacterized protein. (342 aa)
	CRE_28206	Uncharacterized protein. (566 aa)
	CRE_28443	Uncharacterized protein. (354 aa)
	CRE_28101	Uncharacterized protein. (391 aa)
	CRE_28081	Uncharacterized protein. (478 aa)
	CRE_28043	Uncharacterized protein. (534 aa)
	CRE_08732	Uncharacterized protein. (1459 aa)
	CRE_01564	Uncharacterized protein. (874 aa)
	CRE_01928	Uncharacterized protein. (191 aa)
	Cre-dep-1	CRE-DEP-1 protein. (1386 aa)
	Cre-ptp-3	CRE-PTP-3 protein. (2284 aa)
	CRE_04697	Uncharacterized protein. (363 aa)
	Cre-cel-1	Polynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus. (616 aa)
	CRE_08182	Uncharacterized protein. (274 aa)
	Cre-vhp-1	CRE-VHP-1 protein. (650 aa)
	Cre-clr-1	CRE-CLR-1 protein. (1473 aa)
	CRE_11779	Uncharacterized protein. (689 aa)
	Cre-cdc-14	CRE-CDC-14 protein. (767 aa)
	CRE_09980	Uncharacterized protein. (348 aa)
	CRE_12700	Uncharacterized protein. (460 aa)
	CRE_12701	Uncharacterized protein. (345 aa)
	Cre-mtm-6	CRE-MTM-6 protein. (789 aa)
	CRE_24034	Uncharacterized protein. (540 aa)
	CRE_23508	Uncharacterized protein. (1214 aa)
	CRE_23509	Uncharacterized protein. (1229 aa)
	CRE_02386	Uncharacterized protein. (376 aa)
	CRE_29999	Uncharacterized protein. (1163 aa)
	CRE_14124	Uncharacterized protein. (333 aa)
	CRE_20436	Uncharacterized protein. (326 aa)
	CRE_08440	Uncharacterized protein. (1309 aa)
	CRE_08462	Uncharacterized protein. (1196 aa)
	Cre-pir-1	CRE-PIR-1 protein. (229 aa)
	CRE_19574	Uncharacterized protein. (390 aa)
	CRE_01228	Uncharacterized protein. (660 aa)
	CRE_25782	Uncharacterized protein. (392 aa)
	CRE_25785	Uncharacterized protein. (623 aa)
	CRE_25800	Uncharacterized protein. (513 aa)
	CRE_25802	Uncharacterized protein. (516 aa)
	CRE_20937	Uncharacterized protein. (1420 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_01228	CRE_10741	E3N4P6	E3NR11	Uncharacterized protein.	Uncharacterized protein.	0.450
CRE_01228	CRE_14124	E3N4P6	E3MRD3	Uncharacterized protein.	Uncharacterized protein.	0.446
CRE_01228	CRE_19574	E3N4P6	E3N3X3	Uncharacterized protein.	Uncharacterized protein.	0.573
CRE_01228	CRE_25782	E3N4P6	E3N5M1	Uncharacterized protein.	Uncharacterized protein.	0.458
CRE_01228	CRE_28043	E3N4P6	E3LM14	Uncharacterized protein.	Uncharacterized protein.	0.416
CRE_01228	CRE_28081	E3N4P6	E3LM73	Uncharacterized protein.	Uncharacterized protein.	0.413
CRE_01228	CRE_28443	E3N4P6	E3LMG8	Uncharacterized protein.	Uncharacterized protein.	0.545
CRE_01228	CRE_29392	E3N4P6	E3NUJ3	Uncharacterized protein.	Uncharacterized protein.	0.462
CRE_01228	Cre-ptp-2	E3N4P6	E3LRF0	Uncharacterized protein.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.552
CRE_01564	Cre-ptp-1	E3LGH8	E3LT93	Uncharacterized protein.	CRE-PTP-1 protein.	0.467
CRE_01564	Cre-ptp-2	E3LGH8	E3LRF0	Uncharacterized protein.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.771
CRE_02386	Cre-ptp-2	E3MIJ9	E3LRF0	Uncharacterized protein.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.532
CRE_02863	Cre-ptp-2	E3LWB3	E3LRF0	Uncharacterized protein.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.444
CRE_02960	Cre-vhp-1	E3LWX3	E3M4I9	Uncharacterized protein.	CRE-VHP-1 protein.	0.467
CRE_03151	CRE_03656	E3LWU2	E3LXH9	Uncharacterized protein.	Uncharacterized protein.	0.629
CRE_03151	CRE_25800	E3LWU2	E3N5P7	Uncharacterized protein.	Uncharacterized protein.	0.639
CRE_03151	CRE_25802	E3LWU2	E3N5Q1	Uncharacterized protein.	Uncharacterized protein.	0.638
CRE_03151	CRE_28443	E3LWU2	E3LMG8	Uncharacterized protein.	Uncharacterized protein.	0.456
CRE_03151	Cre-ptp-2	E3LWU2	E3LRF0	Uncharacterized protein.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.558
CRE_03151	Cre-vhp-1	E3LWU2	E3M4I9	Uncharacterized protein.	CRE-VHP-1 protein.	0.479