(72 nodes) Homeobox, conserved site network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_24175	Homeobox domain-containing protein. (196 aa)
	Cre-ceh-31	CRE-CEH-31 protein. (266 aa)
	Cre-ceh-30	CRE-CEH-30 protein. (237 aa)
	Cre-ceh-14	CRE-CEH-14 protein. (409 aa)
	Cre-ceh-60	CRE-CEH-60 protein. (389 aa)
	CRE_00191	Homeobox domain-containing protein. (228 aa)
	Cre-mls-2	CRE-MLS-2 protein. (332 aa)
	Cre-ceh-1	CRE-CEH-1 protein. (170 aa)
	Cre-ceh-18	POU domain protein. (544 aa)
	CRE_00376	Homeobox domain-containing protein. (158 aa)
	CRE_01802	Homeobox domain-containing protein. (285 aa)
	CRE_09378	Homeobox domain-containing protein. (421 aa)
	CRE_09379	Uncharacterized protein. (565 aa)
	CRE_09380	Uncharacterized protein. (695 aa)
	Cre-ceh-45	CRE-CEH-45 protein. (236 aa)
	Cre-ceh-2	CRE-CEH-2 protein. (207 aa)
	Cre-ceh-33	CRE-CEH-33 protein. (597 aa)
	Cre-ceh-27	CRE-CEH-27 protein. (266 aa)
	Cre-tab-1	CRE-TAB-1 protein. (229 aa)
	Cre-cog-1	CRE-COG-1 protein. (261 aa)
	Cre-ceh-44	Homeobox protein cut-like. (1461 aa)
	Cre-unc-86	POU domain protein. (346 aa)
	CRE_30662	Homeobox domain-containing protein. (207 aa)
	Cre-ceh-6	POU domain protein. (375 aa)
	Cre-ceh-17	CRE-CEH-17 protein. (231 aa)
	Cre-ceh-12	CRE-CEH-12 protein. (181 aa)
	Cre-ceh-8	CRE-CEH-8 protein. (283 aa)
	Cre-vab-7	CRE-VAB-7 protein. (250 aa)
	Cre-ceh-10	CRE-CEH-10 protein. (344 aa)
	Cre-ceh-24	CRE-CEH-24 protein. (303 aa)
	Cre-alr-1	CRE-ALR-1 protein. (362 aa)
	Cre-vab-3	CRE-VAB-3 protein. (462 aa)
	Cre-ceh-5	CRE-CEH-5 protein. (138 aa)
	Cre-mec-3	CRE-MEC-3 protein. (320 aa)
	CRE_10917	Homeobox domain-containing protein. (227 aa)
	Cre-zag-1	CRE-ZAG-1 protein. (610 aa)
	Cre-unc-30	Homeobox protein. (326 aa)
	Cre-lim-6	CRE-LIM-6 protein. (314 aa)
	Cre-pha-2	CRE-PHA-2 protein. (215 aa)
	Cre-dsc-1	CRE-DSC-1 protein. (306 aa)
	Cre-pal-1	CRE-PAL-1 protein. (269 aa)
	Cre-ceh-43	CRE-CEH-43 protein. (301 aa)
	Cre-ceh-9	CRE-CEH-9 protein. (156 aa)
	Cre-php-3	CRE-PHP-3 protein. (270 aa)
	CRE_24471	Homeobox domain-containing protein. (92 aa)
	Cre-lin-11	CRE-LIN-11 protein. (415 aa)
	Cre-unc-42	CRE-UNC-42 protein. (267 aa)
	Cre-ceh-40	CRE-CEH-40 protein. (322 aa)
	Cre-ceh-28	CRE-CEH-28 protein. (196 aa)
	Cre-ceh-23	CRE-CEH-23 protein. (308 aa)
	Cre-egl-5	CRE-EGL-5 protein. (223 aa)
	Cre-mab-5	CRE-MAB-5 protein. (199 aa)
	Cre-vab-15	CRE-VAB-15 protein. (223 aa)
	Cre-ceh-16	CRE-CEH-16 protein. (175 aa)
	CRE_07572	Homeobox domain-containing protein. (283 aa)
	Cre-ceh-22	CRE-CEH-22 protein. (355 aa)
	Cre-ceh-13	CRE-CEH-13 protein. (223 aa)
	Cre-lin-39	CRE-LIN-39 protein. (256 aa)
	CRE_09683	Homeobox domain-containing protein. (239 aa)
	Cre-irx-1	CRE-IRX-1 protein. (368 aa)
	Cre-unc-4	CRE-UNC-4 protein. (249 aa)
	Cre-eyg-1	CRE-EYG-1 protein. (315 aa)
	Cre-ceh-51	CRE-CEH-51 protein. (241 aa)
	CRE_23686	Homeobox domain-containing protein. (1035 aa)
	CRE_03357	Homeobox domain-containing protein. (167 aa)
	CRE_05123	Homeobox domain-containing protein. (206 aa)
	Cre-ttx-3	CRE-TTX-3 protein. (460 aa)
	Cre-ttx-1	CRE-TTX-1 protein. (384 aa)
	CRE_24207	Homeobox domain-containing protein. (396 aa)
	CRE_24209	Homeobox domain-containing protein. (334 aa)
	Cre-lim-7	CRE-LIM-7 protein. (462 aa)
	Cre-ceh-19	CRE-CEH-19 protein. (220 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_00191	CRE_24207	E3LDN5	E3NCX7	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.464
CRE_00191	Cre-alr-1	E3LDN5	E3M2P7	Homeobox domain-containing protein.	CRE-ALR-1 protein.	0.883
CRE_00191	Cre-ceh-14	E3LDN5	E3LCT8	Homeobox domain-containing protein.	CRE-CEH-14 protein.	0.805
CRE_00191	Cre-ceh-16	E3LDN5	E3MNU9	Homeobox domain-containing protein.	CRE-CEH-16 protein.	0.574
CRE_00191	Cre-ceh-6	E3LDN5	E3LV78	Homeobox domain-containing protein.	POU domain protein.	0.459
CRE_00191	Cre-mls-2	E3LDN5	E3LEB8	Homeobox domain-containing protein.	CRE-MLS-2 protein.	0.449
CRE_00191	Cre-pha-2	E3LDN5	E3MA97	Homeobox domain-containing protein.	CRE-PHA-2 protein.	0.543
CRE_00191	Cre-php-3	E3LDN5	E3MFT0	Homeobox domain-containing protein.	CRE-PHP-3 protein.	0.507
CRE_00191	Cre-ttx-1	E3LDN5	E3NB57	Homeobox domain-containing protein.	CRE-TTX-1 protein.	0.412
CRE_00376	CRE_05123	E3LET5	E3N6B5	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.617
CRE_00376	CRE_09683	E3LET5	E3MWZ8	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.404
CRE_00376	CRE_24175	E3LET5	E3N974	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.446
CRE_00376	CRE_24471	E3LET5	E3MFT2	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.690
CRE_00376	CRE_30662	E3LET5	E3LTK8	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.481
CRE_00376	Cre-ceh-18	E3LET5	E3LER0	Homeobox domain-containing protein.	POU domain protein.	0.454
CRE_00376	Cre-ceh-22	E3LET5	E3MQX5	Homeobox domain-containing protein.	CRE-CEH-22 protein.	0.534
CRE_00376	Cre-ceh-24	E3LET5	E3M0F0	Homeobox domain-containing protein.	CRE-CEH-24 protein.	0.488
CRE_00376	Cre-ceh-33	E3LET5	E3LP57	Homeobox domain-containing protein.	CRE-CEH-33 protein.	0.471
CRE_00376	Cre-ceh-40	E3LET5	E3MJK8	Homeobox domain-containing protein.	CRE-CEH-40 protein.	0.859
CRE_00376	Cre-ceh-6	E3LET5	E3LV78	Homeobox domain-containing protein.	POU domain protein.	0.506