(12 nodes) Spectrin/alpha-actinin network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-unc-70	Spectrin beta chain; Belongs to the spectrin family. (2342 aa)
	CRE_02783	Uncharacterized protein. (731 aa)
	CRE_20620	Uncharacterized protein. (1029 aa)
	CRE_19537	Uncharacterized protein. (306 aa)
	CRE_09761	Uncharacterized protein. (3300 aa)
	CRE_09760	Uncharacterized protein. (892 aa)
	CRE_04184	Uncharacterized protein. (634 aa)
	Cre-dys-1	CRE-DYS-1 protein. (3571 aa)
	CRE_25422	Uncharacterized protein. (2266 aa)
	Cre-spc-1	CRE-SPC-1 protein. (2370 aa)
	Cre-atn-1	CRE-ATN-1 protein. (921 aa)
	Cre-sma-1	CRE-SMA-1 protein. (4172 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_02783	CRE_09761	E3NV09	E3N9Y2	Uncharacterized protein.	Uncharacterized protein.	0.825
CRE_02783	CRE_20620	E3NV09	E3NN49	Uncharacterized protein.	Uncharacterized protein.	0.936
CRE_02783	CRE_25422	E3NV09	E3LT30	Uncharacterized protein.	Uncharacterized protein.	0.770
CRE_02783	Cre-sma-1	E3NV09	E3LPU9	Uncharacterized protein.	CRE-SMA-1 protein.	0.677
CRE_02783	Cre-spc-1	E3NV09	E3LCP1	Uncharacterized protein.	CRE-SPC-1 protein.	0.770
CRE_02783	Cre-unc-70	E3NV09	E3LPH0	Uncharacterized protein.	Spectrin beta chain; Belongs to the spectrin family.	0.677
CRE_04184	CRE_25422	E3MYV4	E3LT30	Uncharacterized protein.	Uncharacterized protein.	0.770
CRE_04184	Cre-sma-1	E3MYV4	E3LPU9	Uncharacterized protein.	CRE-SMA-1 protein.	0.677
CRE_04184	Cre-spc-1	E3MYV4	E3LCP1	Uncharacterized protein.	CRE-SPC-1 protein.	0.770
CRE_04184	Cre-unc-70	E3MYV4	E3LPH0	Uncharacterized protein.	Spectrin beta chain; Belongs to the spectrin family.	0.677
CRE_09760	CRE_25422	E3N9Y1	E3LT30	Uncharacterized protein.	Uncharacterized protein.	0.702
CRE_09760	Cre-sma-1	E3N9Y1	E3LPU9	Uncharacterized protein.	CRE-SMA-1 protein.	0.620
CRE_09760	Cre-spc-1	E3N9Y1	E3LCP1	Uncharacterized protein.	CRE-SPC-1 protein.	0.702
CRE_09760	Cre-unc-70	E3N9Y1	E3LPH0	Uncharacterized protein.	Spectrin beta chain; Belongs to the spectrin family.	0.620
CRE_09761	CRE_02783	E3N9Y2	E3NV09	Uncharacterized protein.	Uncharacterized protein.	0.825
CRE_09761	CRE_20620	E3N9Y2	E3NN49	Uncharacterized protein.	Uncharacterized protein.	0.419
CRE_09761	CRE_25422	E3N9Y2	E3LT30	Uncharacterized protein.	Uncharacterized protein.	0.770
CRE_09761	Cre-sma-1	E3N9Y2	E3LPU9	Uncharacterized protein.	CRE-SMA-1 protein.	0.677
CRE_09761	Cre-spc-1	E3N9Y2	E3LCP1	Uncharacterized protein.	CRE-SPC-1 protein.	0.770
CRE_09761	Cre-unc-70	E3N9Y2	E3LPH0	Uncharacterized protein.	Spectrin beta chain; Belongs to the spectrin family.	0.677