(49 nodes) Fibronectin type III superfamily network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-igcm-1	CRE-IGCM-1 protein. (1063 aa)
	Cre-sax-7	CRE-SAX-7 protein. (1340 aa)
	Cre-rig-4	CRE-RIG-4 protein. (2353 aa)
	Cre-hcf-1	CRE-HCF-1 protein. (781 aa)
	Cre-clr-1	CRE-CLR-1 protein. (1473 aa)
	Cre-rig-6	CRE-RIG-6 protein. (1216 aa)
	CRE_07483	Uncharacterized protein. (1580 aa)
	Cre-twk-32	CRE-TWK-32 protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (614 aa)
	CRE_05707	Uncharacterized protein. (1163 aa)
	Cre-rol-3	CRE-ROL-3 protein. (1333 aa)
	Cre-unc-40	CRE-UNC-40 protein. (1432 aa)
	Cre-daf-2	Receptor protein-tyrosine kinase. (1883 aa)
	Cre-twk-30	CRE-TWK-30 protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (637 aa)
	Cre-cle-1	CRE-CLE-1 protein. (1235 aa)
	CRE_31104	Uncharacterized protein. (13106 aa)
	Cre-ttn-1	CRE-TTN-1 protein. (2780 aa)
	Cre-dig-1	CRE-DIG-1 protein. (13921 aa)
	Cre-let-805	CRE-LET-805 protein. (4463 aa)
	Cre-kal-1	CRE-KAL-1 protein. (710 aa)
	Cre-dep-1	CRE-DEP-1 protein. (1386 aa)
	CRE_02294	Uncharacterized protein. (911 aa)
	Cre-ptp-3	CRE-PTP-3 protein. (2284 aa)
	CRE_00354	Uncharacterized protein. (482 aa)
	CRE_00679	Uncharacterized protein. (1110 aa)
	Cre-igcm-2	CRE-IGCM-2 protein. (814 aa)
	CRE_23263	Fibronectin type-III domain-containing protein. (200 aa)
	CRE_30310	Uncharacterized protein. (880 aa)
	CRE_22221	Ig-like domain-containing protein. (451 aa)
	CRE_30374	Uncharacterized protein. (1519 aa)
	CRE_30373	Uncharacterized protein. (772 aa)
	Cre-jac-1	CRE-JAC-1 protein. (1012 aa)
	CRE_30371	Fibronectin type-III domain-containing protein. (260 aa)
	CRE_25792	Uncharacterized protein. (1378 aa)
	Cre-rig-1	CRE-RIG-1 protein. (1080 aa)
	Cre-unc-22	CRE-UNC-22 protein. (7364 aa)
	Cre-vab-1	CRE-VAB-1 protein. (1099 aa)
	CRE_05001	Uncharacterized protein. (678 aa)
	CRE_03206	Uncharacterized protein. (682 aa)
	CRE_30039	Uncharacterized protein. (1571 aa)
	Cre-lad-2	CRE-LAD-2 protein. (704 aa)
	CRE_29999	Uncharacterized protein. (1163 aa)
	Cre-tag-168	CRE-TAG-168 protein. (1088 aa)
	CRE_02369	Uncharacterized protein. (345 aa)
	Cre-unc-73	CRE-UNC-73 protein. (2483 aa)
	CRE_24006	Uncharacterized protein. (479 aa)
	CRE_24005	Uncharacterized protein. (1571 aa)
	Cre-syg-2	CRE-SYG-2 protein. (1277 aa)
	Cre-madd-2	CRE-MADD-2 protein. (748 aa)
	Cre-ncam-1	CRE-NCAM-1 protein. (970 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_00354	CRE_02294	E3LEP5	E3LG42	Uncharacterized protein.	Uncharacterized protein.	0.544
CRE_00354	CRE_29999	E3LEP5	E3MM40	Uncharacterized protein.	Uncharacterized protein.	0.519
CRE_00354	Cre-clr-1	E3LEP5	E3M4M7	Uncharacterized protein.	CRE-CLR-1 protein.	0.519
CRE_00354	Cre-daf-2	E3LEP5	E3LWG9	Uncharacterized protein.	Receptor protein-tyrosine kinase.	0.527
CRE_00354	Cre-dep-1	E3LEP5	E3LG53	Uncharacterized protein.	CRE-DEP-1 protein.	0.544
CRE_00354	Cre-kal-1	E3LEP5	E3LN18	Uncharacterized protein.	CRE-KAL-1 protein.	0.798
CRE_00354	Cre-ptp-3	E3LEP5	E3LFH4	Uncharacterized protein.	CRE-PTP-3 protein.	0.519
CRE_00354	Cre-vab-1	E3LEP5	E3MRW9	Uncharacterized protein.	CRE-VAB-1 protein.	0.473
CRE_02294	CRE_00354	E3LG42	E3LEP5	Uncharacterized protein.	Uncharacterized protein.	0.544
CRE_02294	CRE_05707	E3LG42	E3LZM7	Uncharacterized protein.	Uncharacterized protein.	0.684
CRE_02294	CRE_23263	E3LG42	E3NTB1	Uncharacterized protein.	Fibronectin type-III domain-containing protein.	0.445
CRE_02294	CRE_30310	E3LG42	E3NRC5	Uncharacterized protein.	Uncharacterized protein.	0.445
CRE_02294	CRE_30371	E3LG42	E3N613	Uncharacterized protein.	Fibronectin type-III domain-containing protein.	0.445
CRE_02294	CRE_30373	E3LG42	E3N615	Uncharacterized protein.	Uncharacterized protein.	0.445
CRE_02294	CRE_30374	E3LG42	E3N616	Uncharacterized protein.	Uncharacterized protein.	0.445
CRE_02294	Cre-dig-1	E3LG42	E3LSS0	Uncharacterized protein.	CRE-DIG-1 protein.	0.529
CRE_02294	Cre-jac-1	E3LG42	E3N614	Uncharacterized protein.	CRE-JAC-1 protein.	0.445
CRE_02294	Cre-lad-2	E3LG42	E3MMA4	Uncharacterized protein.	CRE-LAD-2 protein.	0.425
CRE_02294	Cre-rig-6	E3LG42	E3M476	Uncharacterized protein.	CRE-RIG-6 protein.	0.425
CRE_02294	Cre-rol-3	E3LG42	E3LZM6	Uncharacterized protein.	CRE-ROL-3 protein.	0.684