(34 nodes) Thrombospondin type-1 (TSP1) repeat superfamily network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_06173	Uncharacterized protein. (307 aa)
	CRE_27943	GON domain-containing protein. (382 aa)
	CRE_23802	Uncharacterized protein. (377 aa)
	Cre-adt-2	CRE-ADT-2 protein. (1042 aa)
	CRE_00099	Uncharacterized protein. (1179 aa)
	CRE_00824	Uncharacterized protein. (259 aa)
	CRE_00346	Uncharacterized protein. (672 aa)
	CRE_00856	Peptidase M12B domain-containing protein. (949 aa)
	CRE_01602	Uncharacterized protein. (128 aa)
	Cre-mig-6	CRE-MIG-6 protein. (1553 aa)
	CRE_27059	Uncharacterized protein. (96 aa)
	CRE_27097	Uncharacterized protein. (822 aa)
	Cre-spon-1	CRE-SPON-1 protein. (831 aa)
	Cre-dpy-31	Zinc metalloproteinase. (596 aa)
	CRE_30732	Uncharacterized protein. (197 aa)
	CRE_29771	Uncharacterized protein. (1045 aa)
	CRE_03689	Uncharacterized protein. (681 aa)
	CRE_04627	SMB domain-containing protein. (437 aa)
	CRE_04513	Uncharacterized protein. (310 aa)
	CRE_07445	Apple domain-containing protein. (847 aa)
	CRE_17077	Uncharacterized protein. (535 aa)
	Cre-nas-38	Zinc metalloproteinase. (742 aa)
	CRE_16711	Uncharacterized protein. (152 aa)
	CRE_16712	Uncharacterized protein. (130 aa)
	CRE_16713	Uncharacterized protein. (234 aa)
	CRE_16717	Uncharacterized protein. (1952 aa)
	Cre-gon-1	CRE-GON-1 protein. (2717 aa)
	Cre-nas-37	Zinc metalloproteinase. (765 aa)
	CRE_03315	Uncharacterized protein. (865 aa)
	Cre-unc-5	CRE-UNC-5 protein. (920 aa)
	CRE_18087	Uncharacterized protein. (3133 aa)
	CRE_20821	Uncharacterized protein. (548 aa)
	Cre-adt-1	CRE-ADT-1 protein. (1426 aa)
	Cre-nas-36	Zinc metalloproteinase. (612 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_00099	Cre-mig-6	E3LD57	E3LKC5	Uncharacterized protein.	CRE-MIG-6 protein.	0.467
CRE_00099	Cre-spon-1	E3LD57	E3LQK5	Uncharacterized protein.	CRE-SPON-1 protein.	0.559
CRE_00346	Cre-mig-6	E3LEM8	E3LKC5	Uncharacterized protein.	CRE-MIG-6 protein.	0.633
CRE_00346	Cre-spon-1	E3LEM8	E3LQK5	Uncharacterized protein.	CRE-SPON-1 protein.	0.663
CRE_00824	CRE_17077	E3LEJ5	E3MA09	Uncharacterized protein.	Uncharacterized protein.	0.832
CRE_00856	CRE_03689	E3LEQ3	E3LXQ5	Peptidase M12B domain-containing protein.	Uncharacterized protein.	0.674
CRE_00856	CRE_27097	E3LEQ3	E3LQ78	Peptidase M12B domain-containing protein.	Uncharacterized protein.	0.674
CRE_00856	CRE_29771	E3LEQ3	E3LVP9	Peptidase M12B domain-containing protein.	Uncharacterized protein.	0.723
CRE_00856	Cre-adt-1	E3LEQ3	E3MVP0	Peptidase M12B domain-containing protein.	CRE-ADT-1 protein.	0.468
CRE_00856	Cre-adt-2	E3LEQ3	E3LCM4	Peptidase M12B domain-containing protein.	CRE-ADT-2 protein.	0.488
CRE_00856	Cre-gon-1	E3LEQ3	E3MLY6	Peptidase M12B domain-containing protein.	CRE-GON-1 protein.	0.517
CRE_00856	Cre-mig-6	E3LEQ3	E3LKC5	Peptidase M12B domain-containing protein.	CRE-MIG-6 protein.	0.625
CRE_00856	Cre-spon-1	E3LEQ3	E3LQK5	Peptidase M12B domain-containing protein.	CRE-SPON-1 protein.	0.651
CRE_03689	CRE_00856	E3LXQ5	E3LEQ3	Uncharacterized protein.	Peptidase M12B domain-containing protein.	0.674
CRE_03689	CRE_27097	E3LXQ5	E3LQ78	Uncharacterized protein.	Uncharacterized protein.	0.526
CRE_03689	Cre-spon-1	E3LXQ5	E3LQK5	Uncharacterized protein.	CRE-SPON-1 protein.	0.573
CRE_04513	Cre-spon-1	E3LYS9	E3LQK5	Uncharacterized protein.	CRE-SPON-1 protein.	0.563
CRE_04627	Cre-mig-6	E3LYE3	E3LKC5	SMB domain-containing protein.	CRE-MIG-6 protein.	0.662
CRE_07445	CRE_29771	E3M2F3	E3LVP9	Apple domain-containing protein.	Uncharacterized protein.	0.572
CRE_07445	Cre-mig-6	E3M2F3	E3LKC5	Apple domain-containing protein.	CRE-MIG-6 protein.	0.548