(127 nodes) Ankyrin repeat-containing domain superfamily network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_09685	ANK_REP_REGION domain-containing protein. (264 aa)
	CRE_31339	ANK_REP_REGION domain-containing protein. (845 aa)
	Cre-kri-1	CRE-KRI-1 protein. (734 aa)
	CRE_05974	ANK_REP_REGION domain-containing protein. (389 aa)
	Cre-vab-19	CRE-VAB-19 protein. (1085 aa)
	CRE_24678	ANK_REP_REGION domain-containing protein. (1298 aa)
	CRE_24730	ANK_REP_REGION domain-containing protein. (1266 aa)
	CRE_31408	ANK_REP_REGION domain-containing protein. (319 aa)
	CRE_07765	Uncharacterized protein. (1069 aa)
	CRE_07769	ANK_REP_REGION domain-containing protein. (1027 aa)
	CRE_07756	Uncharacterized protein. (1214 aa)
	CRE_07771	Uncharacterized protein. (1202 aa)
	CRE_07757	Uncharacterized protein. (2386 aa)
	CRE_07758	ANK_REP_REGION domain-containing protein. (943 aa)
	Cre-ocr-1	CRE-OCR-1 protein. (612 aa)
	CRE_25847	Uncharacterized protein. (1023 aa)
	Cre-arc-1	CRE-ARC-1 protein. (912 aa)
	Cre-trp-2	CRE-TRP-2 protein; Belongs to the transient receptor (TC 1.A.4) family. (894 aa)
	CRE_15722	Uncharacterized protein. (326 aa)
	Cre-glna-3	CRE-GLNA-3 protein. (595 aa)
	Cre-glp-1	CRE-GLP-1 protein. (1308 aa)
	Cre-lin-12	CRE-LIN-12 protein. (1083 aa)
	CRE_07848	ANK_REP_REGION domain-containing protein. (629 aa)
	CRE_07849	ANK_REP_REGION domain-containing protein. (72 aa)
	Cre-mel-11	CRE-MEL-11 protein. (1161 aa)
	CRE_05279	Uncharacterized protein. (482 aa)
	CRE_09866	ANK_REP_REGION domain-containing protein. (520 aa)
	CRE_04397	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (598 aa)
	CRE_07894	ANK_REP_REGION domain-containing protein. (318 aa)
	CRE_13163	Uncharacterized protein. (906 aa)
	CRE_13164	Uncharacterized protein. (603 aa)
	CRE_16521	ANK_REP_REGION domain-containing protein. (560 aa)
	CRE_21646	ANK_REP_REGION domain-containing protein. (462 aa)
	CRE_21657	Uncharacterized protein. (2639 aa)
	CRE_19589	ANK_REP_REGION domain-containing protein. (1817 aa)
	CRE_06232	ANK_REP_REGION domain-containing protein. (952 aa)
	CRE_06233	ANK_REP_REGION domain-containing protein. (1266 aa)
	CRE_23259	Uncharacterized protein. (782 aa)
	CRE_05347	ANK_REP_REGION domain-containing protein; Belongs to the transient receptor (TC 1.A.4) family. (779 aa)
	CRE_15143	ANK_REP_REGION domain-containing protein. (775 aa)
	CRE_07951	ANK_REP_REGION domain-containing protein. (458 aa)
	CRE_15150	ANK_REP_REGION domain-containing protein. (956 aa)
	CRE_20657	ANK_REP_REGION domain-containing protein. (257 aa)
	CRE_23870	ANK_REP_REGION domain-containing protein. (555 aa)
	Cre-tag-233	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (577 aa)
	CRE_22498	ANK_REP_REGION domain-containing protein. (457 aa)
	CRE_15565	ANK_REP_REGION domain-containing protein. (382 aa)
	Cre-trpa-1	CRE-TRPA-1 protein; Belongs to the transient receptor (TC 1.A.4) family. (673 aa)
	CRE_15465	ANK_REP_REGION domain-containing protein. (509 aa)
	Cre-pat-4	CRE-PAT-4 protein. (352 aa)
	Cre-sec-20	CRE-SEC-20 protein. (246 aa)
	CRE_16926	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (598 aa)
	CRE_16922	Uncharacterized protein. (1866 aa)
	CRE_17342	Uncharacterized protein. (1002 aa)
	Cre-osm-9	CRE-OSM-9 protein; Belongs to the transient receptor (TC 1.A.4) family. (939 aa)
	CRE_12419	Uncharacterized protein. (654 aa)
	CRE_03226	Uncharacterized protein. (1069 aa)
	CRE_25661	Uncharacterized protein. (864 aa)
	CRE_28703	ANK_REP_REGION domain-containing protein. (1206 aa)
	CRE_19274	Uncharacterized protein. (483 aa)
	CRE_01110	Uncharacterized protein. (796 aa)
	CRE_23895	Uncharacterized protein. (545 aa)
	CRE_23949	ANK_REP_REGION domain-containing protein. (931 aa)
	CRE_24512	Uncharacterized protein. (621 aa)
	CRE_24451	Uncharacterized protein. (1142 aa)
	CRE_21172	Uncharacterized protein. (1047 aa)
	Cre-mlt-4	CRE-MLT-4 protein. (565 aa)
	Cre-trp-1	CRE-TRP-1 protein; Belongs to the transient receptor (TC 1.A.4) family. (1037 aa)
	CRE_20203	ANK_REP_REGION domain-containing protein. (224 aa)
	Cre-brd-1	CRE-BRD-1 protein. (762 aa)
	CRE_15347	ANK_REP_REGION domain-containing protein. (622 aa)
	Cre-ocr-3	CRE-OCR-3 protein; Belongs to the transient receptor (TC 1.A.4) family. (829 aa)
	CRE_15956	PNPLA domain-containing protein. (500 aa)
	CRE_16664	Uncharacterized protein. (1169 aa)
	CRE_17194	Uncharacterized protein. (930 aa)
	CRE_12607	ANK_REP_REGION domain-containing protein. (509 aa)
	Cre-tag-144	CRE-TAG-144 protein. (1469 aa)
	CRE_12729	Uncharacterized protein. (824 aa)
	Cre-ocr-4	CRE-OCR-4 protein; Belongs to the transient receptor (TC 1.A.4) family. (769 aa)
	Cre-hecd-1	CRE-HECD-1 protein. (2775 aa)
	Cre-ocr-2	CRE-OCR-2 protein; Belongs to the transient receptor (TC 1.A.4) family. (895 aa)
	CRE_11086	Uncharacterized protein. (2702 aa)
	CRE_08040	ANK_REP_REGION domain-containing protein. (248 aa)
	CRE_08036	ANK_REP_REGION domain-containing protein. (483 aa)
	Cre-ikb-1	CRE-IKB-1 protein. (674 aa)
	Cre-lem-3	CRE-LEM-3 protein. (688 aa)
	Cre-git-1	CRE-GIT-1 protein. (670 aa)
	CRE_07557	ANK_REP_REGION domain-containing protein. (114 aa)
	CRE_07430	ANK_REP_REGION domain-containing protein. (1643 aa)
	CRE_06607	ANK_REP_REGION domain-containing protein. (1173 aa)
	CRE_06582	WSN domain-containing protein. (1276 aa)
	CRE_06355	ANK_REP_REGION domain-containing protein. (3451 aa)
	CRE_06581	ANK_REP_REGION domain-containing protein. (1247 aa)
	CRE_06353	Uncharacterized protein. (1213 aa)
	CRE_06666	ANK_REP_REGION domain-containing protein. (1161 aa)
	CRE_06414	Uncharacterized protein. (1210 aa)
	CRE_06664	Uncharacterized protein. (1211 aa)
	CRE_05741	ANK_REP_REGION domain-containing protein. (1012 aa)
	Cre-cnt-2	CRE-CNT-2 protein. (1118 aa)
	CRE_04887	ANK_REP_REGION domain-containing protein. (1021 aa)
	Cre-acbp-5	CRE-ACBP-5 protein. (274 aa)
	CRE_03147	ANK_REP_REGION domain-containing protein. (590 aa)
	CRE_29617	Uncharacterized protein. (220 aa)
	CRE_29829	ANK_REP_REGION domain-containing protein. (554 aa)
	CRE_29694	ANK_REP_REGION domain-containing protein. (930 aa)
	CRE_30989	ANK_REP_REGION domain-containing protein. (975 aa)
	CRE_25145	ANK_REP_REGION domain-containing protein. (692 aa)
	CRE_25144	Uncharacterized protein. (601 aa)
	CRE_25084	Uncharacterized protein. (1265 aa)
	CRE_25583	Uncharacterized protein. (1186 aa)
	Cre-cnt-1	CRE-CNT-1 protein. (1016 aa)
	CRE_27369	ANK_REP_REGION domain-containing protein. (649 aa)
	CRE_27031	ANK_REP_REGION domain-containing protein. (489 aa)
	Cre-ape-1	CRE-APE-1 protein. (758 aa)
	Cre-dapk-1	CRE-DAPK-1 protein. (1622 aa)
	Cre-lrk-1	CRE-LRK-1 protein. (2095 aa)
	CRE_28094	ANK_REP_REGION domain-containing protein. (275 aa)
	Cre-trp-4	CRE-TRP-4 protein; Belongs to the transient receptor (TC 1.A.4) family. (1962 aa)
	CRE_18553	ANK_REP_REGION domain-containing protein. (863 aa)
	CRE_18704	Uncharacterized protein. (1527 aa)
	Cre-pme-5	Poly [ADP-ribose] polymerase. (2258 aa)
	CRE_18418	Uncharacterized protein. (667 aa)
	CRE_18416	Uncharacterized protein. (1192 aa)
	Cre-glna-2	CRE-GLNA-2 protein. (606 aa)
	CRE_01615	Uncharacterized protein. (386 aa)
	Cre-shn-1	CRE-SHN-1 protein. (1133 aa)
	CRE_00673	Uncharacterized protein. (777 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_01110	CRE_06355	E3MI70	E3M1N1	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.520
CRE_01110	CRE_12419	E3MI70	E3MR03	Uncharacterized protein.	Uncharacterized protein.	0.543
CRE_01110	CRE_15150	E3MI70	E3NU20	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.481
CRE_01110	CRE_15347	E3MI70	E3MCD6	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.641
CRE_01110	CRE_16922	E3MI70	E3MSE7	Uncharacterized protein.	Uncharacterized protein.	0.481
CRE_01110	CRE_25661	E3MI70	E3MLA2	Uncharacterized protein.	Uncharacterized protein.	0.584
CRE_01110	CRE_28094	E3MI70	E3LM93	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.582
CRE_01110	Cre-arc-1	E3MI70	E3NB24	Uncharacterized protein.	CRE-ARC-1 protein.	0.452
CRE_01110	Cre-dapk-1	E3MI70	E3LME1	Uncharacterized protein.	CRE-DAPK-1 protein.	0.502
CRE_01110	Cre-lrk-1	E3MI70	E3LM95	Uncharacterized protein.	CRE-LRK-1 protein.	0.582
CRE_01110	Cre-shn-1	E3MI70	E3LFA1	Uncharacterized protein.	CRE-SHN-1 protein.	0.532
CRE_03226	CRE_21172	E3MMG5	E3MF43	Uncharacterized protein.	Uncharacterized protein.	0.927
CRE_03226	CRE_31408	E3MMG5	E3N5S9	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.914
CRE_04397	CRE_07951	E3NLV3	E3NTI3	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	ANK_REP_REGION domain-containing protein.	0.541
CRE_04397	CRE_08036	E3NLV3	E3M3X7	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	ANK_REP_REGION domain-containing protein.	0.486
CRE_04397	CRE_12419	E3NLV3	E3MR03	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Uncharacterized protein.	0.464
CRE_04397	CRE_15143	E3NLV3	E3NT63	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	ANK_REP_REGION domain-containing protein.	0.458
CRE_04397	CRE_15465	E3NLV3	E3MSS1	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	ANK_REP_REGION domain-containing protein.	0.545
CRE_04397	CRE_15565	E3NLV3	E3MSZ6	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	ANK_REP_REGION domain-containing protein.	0.509
CRE_04397	CRE_17194	E3NLV3	E3M9Z9	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Uncharacterized protein.	0.462