(36 nodes) High mobility group box domain superfamily network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_14187	HMG box domain-containing protein. (452 aa)
	CRE_13651	Uncharacterized protein. (268 aa)
	CRE_13650	Uncharacterized protein. (652 aa)
	CRE_13605	HMG box domain-containing protein. (237 aa)
	CRE_13600	HMG box domain-containing protein. (159 aa)
	CRE_13599	HMG box domain-containing protein. (217 aa)
	Cre-gei-3	CRE-GEI-3 protein. (1122 aa)
	CRE_31226	Uncharacterized protein. (333 aa)
	Cre-sox-3	CRE-SOX-3 protein. (212 aa)
	Cre-hmg-5	CRE-HMG-5 protein. (202 aa)
	CRE_10931	HMG box domain-containing protein. (272 aa)
	Cre-hmg-1.1	CRE-HMG-1.1 protein. (95 aa)
	Cre-pop-1	CRE-POP-1 protein. (442 aa)
	Cre-hmg-4	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (737 aa)
	Cre-pbrm-1	CRE-PBRM-1 protein. (1897 aa)
	CRE_17489	HMG box domain-containing protein. (152 aa)
	CRE_19937	Uncharacterized protein. (338 aa)
	CRE_20975	Uncharacterized protein. (935 aa)
	CRE_20978	Uncharacterized protein. (298 aa)
	CRE_24243	Uncharacterized protein. (557 aa)
	Cre-set-16	CRE-SET-16 protein. (2509 aa)
	Cre-sox-2	CRE-SOX-2 protein. (282 aa)
	Cre-egl-13	CRE-EGL-13 protein. (488 aa)
	Cre-sox-4	CRE-SOX-4 protein. (246 aa)
	CRE_28315	HMG box domain-containing protein. (147 aa)
	CRE_28162	HMG box domain-containing protein. (346 aa)
	Cre-sem-2	CRE-SEM-2 protein. (407 aa)
	CRE_15039	HMG box domain-containing protein. (273 aa)
	CRE_02753	HMG box domain-containing protein. (262 aa)
	CRE_31648	HMG box domain-containing protein. (202 aa)
	CRE_21088	Uncharacterized protein. (298 aa)
	CRE_25200	HMG box domain-containing protein. (341 aa)
	Cre-hmg-1.2	CRE-HMG-1.2 protein. (238 aa)
	CRE_03905	Uncharacterized protein. (222 aa)
	CRE_03995	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (702 aa)
	CRE_14849	HMG box domain-containing protein. (271 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_02753	CRE_13605	E3NRP9	E3N1H0	HMG box domain-containing protein.	HMG box domain-containing protein.	0.472
CRE_02753	CRE_15039	E3NRP9	E3NKA4	HMG box domain-containing protein.	HMG box domain-containing protein.	0.472
CRE_02753	CRE_19937	E3NRP9	E3N8D9	HMG box domain-containing protein.	Uncharacterized protein.	0.751
CRE_02753	CRE_20978	E3NRP9	E3NFR4	HMG box domain-containing protein.	Uncharacterized protein.	0.472
CRE_02753	CRE_21088	E3NRP9	E3NTA4	HMG box domain-containing protein.	Uncharacterized protein.	0.472
CRE_02753	CRE_28162	E3NRP9	E3LMM9	HMG box domain-containing protein.	HMG box domain-containing protein.	0.723
CRE_02753	Cre-pop-1	E3NRP9	E3N4Q3	HMG box domain-containing protein.	CRE-POP-1 protein.	0.646
CRE_02753	Cre-sem-2	E3NRP9	E3LMN0	HMG box domain-containing protein.	CRE-SEM-2 protein.	0.725
CRE_02753	Cre-sox-2	E3NRP9	E3LCV8	HMG box domain-containing protein.	CRE-SOX-2 protein.	0.709
CRE_02753	Cre-sox-3	E3NRP9	E3MC38	HMG box domain-containing protein.	CRE-SOX-3 protein.	0.707
CRE_02753	Cre-sox-4	E3NRP9	E3LEX5	HMG box domain-containing protein.	CRE-SOX-4 protein.	0.713
CRE_03995	CRE_14187	E3LY91	E3N1J8	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	HMG box domain-containing protein.	0.805
CRE_03995	CRE_28315	E3LY91	E3LLS9	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	HMG box domain-containing protein.	0.805
CRE_03995	CRE_31226	E3LY91	E3MLP2	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	Uncharacterized protein.	0.777
CRE_03995	CRE_31648	E3LY91	E3NSQ1	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	HMG box domain-containing protein.	0.805
CRE_03995	Cre-hmg-1.1	E3LY91	E3M432	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	CRE-HMG-1.1 protein.	0.777
CRE_03995	Cre-hmg-1.2	E3LY91	E3LWT7	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	CRE-HMG-1.2 protein.	0.805
CRE_03995	Cre-hmg-5	E3LY91	E3M7H1	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	CRE-HMG-5 protein.	0.805
CRE_13600	CRE_13605	E3N1G2	E3N1H0	HMG box domain-containing protein.	HMG box domain-containing protein.	0.472
CRE_13600	CRE_15039	E3N1G2	E3NKA4	HMG box domain-containing protein.	HMG box domain-containing protein.	0.472