63 items (Caenorhabditis remanei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-pas-2	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (231 aa)
	Cre-rpn-12	CRE-RPN-12 protein. (250 aa)
	Cre-rpn-9	CRE-RPN-9 protein. (390 aa)
	Cre-pas-7	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (250 aa)
	CRE_09394	AAA domain-containing protein; Belongs to the AAA ATPase family. (416 aa)
	Cre-rpt-5	CRE-RPT-5 protein; Belongs to the AAA ATPase family. (430 aa)
	Cre-rpn-10	CRE-RPN-10 protein. (350 aa)
	CRE_28562	Uncharacterized protein; Belongs to the AAA ATPase family. (309 aa)
	CRE_28272	AAA domain-containing protein; Belongs to the AAA ATPase family. (409 aa)
	CRE_27101	BLM10_mid domain-containing protein. (729 aa)
	CRE_27102	DUF3437 domain-containing protein. (649 aa)
	CRE_27134	Uncharacterized protein. (1926 aa)
	Cre-rpt-1	CRE-RPT-1 protein; Belongs to the AAA ATPase family. (435 aa)
	CRE_26482	Uncharacterized protein. (197 aa)
	Cre-pas-1	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (246 aa)
	Cre-pas-6	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (271 aa)
	Cre-rpt-2	CRE-RPT-2 protein; Belongs to the AAA ATPase family. (443 aa)
	Cre-pbs-7	Proteasome subunit beta; Belongs to the peptidase T1B family. (236 aa)
	Cre-pas-4	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (253 aa)
	Cre-pas-5	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (258 aa)
	Cre-ubq-2	CRE-UBQ-2 protein. (128 aa)
	Cre-rpn-2	26S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family. (978 aa)
	CRE_03184	AAA domain-containing protein; Belongs to the AAA ATPase family. (443 aa)
	Cre-cul-2	CRE-CUL-2 protein; Belongs to the cullin family. (815 aa)
	Cre-ubq-1	CRE-UBQ-1 protein. (920 aa)
	CRE_06288	MPN domain-containing protein. (323 aa)
	Cre-pbs-3	Proteasome subunit beta. (204 aa)
	CRE_11090	PCI domain-containing protein. (489 aa)
	CRE_14692	Uncharacterized protein. (89 aa)
	CRE_14579	AAA domain-containing protein; Belongs to the AAA ATPase family. (404 aa)
	Cre-rpn-6	CRE-RPN-6 protein. (420 aa)
	CRE_20353	Uncharacterized protein. (507 aa)
	Cre-hif-1	CRE-HIF-1 protein. (732 aa)
	Cre-pbs-4	Proteasome subunit beta. (204 aa)
	Cre-rpn-8	CRE-RPN-8 protein. (362 aa)
	CRE_22877	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (239 aa)
	Cre-rbx-1	CRE-RBX-1 protein. (112 aa)
	Cre-rpn-3	CRE-RPN-3 protein. (506 aa)
	CRE_01016	Uncharacterized protein. (266 aa)
	Cre-elb-1	CRE-ELB-1 protein. (117 aa)
	Cre-elc-2	CRE-ELC-2 protein; Belongs to the SKP1 family. (162 aa)
	Cre-rpn-11	CRE-RPN-11 protein. (312 aa)
	Cre-egl-9	CRE-EGL-9 protein. (688 aa)
	CRE_23600	AAA domain-containing protein; Belongs to the AAA ATPase family. (329 aa)
	Cre-ubl-1	CRE-UBL-1 protein. (160 aa)
	Cre-pas-3	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (250 aa)
	Cre-rpn-5	CRE-RPN-5 protein. (507 aa)
	CRE_25974	AAA_lid_3 domain-containing protein. (114 aa)
	CRE_27745	BLM10_mid domain-containing protein. (816 aa)
	CRE_27746	DUF3437 domain-containing protein. (1052 aa)
	CRE_05990	Skp1_POZ domain-containing protein; Belongs to the SKP1 family. (167 aa)
	CRE_08432	Uncharacterized protein. (1881 aa)
	CRE_12205	PCI domain-containing protein. (472 aa)
	Cre-pbs-5	CRE-PBS-5 protein. (284 aa)
	Cre-rpt-4	CRE-RPT-4 protein; Belongs to the AAA ATPase family. (492 aa)
	Cre-pbs-2	CRE-PBS-2 protein. (290 aa)
	CRE_21970	Uncharacterized protein. (98 aa)
	Cre-rpn-1	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family. (989 aa)
	Cre-rpn-7	CRE-RPN-7 protein. (409 aa)
	CRE_25761	PCI domain-containing protein. (372 aa)
	CRE_15697	Ribosomal_L40e domain-containing protein. (62 aa)
	Cre-pbs-1	Proteasome subunit beta. (239 aa)
	Cre-rpt-6	CRE-RPT-6 protein; Belongs to the AAA ATPase family. (408 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_01016	CRE_03184	E3MIE0	E3LX06	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.841
CRE_01016	CRE_05990	E3MIE0	E3MZF4	Uncharacterized protein.	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	0.669
CRE_01016	CRE_06288	E3MIE0	E3M0Y8	Uncharacterized protein.	MPN domain-containing protein.	0.904
CRE_01016	CRE_09394	E3MIE0	E3LIK9	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.841
CRE_01016	CRE_11090	E3MIE0	E3M5G9	Uncharacterized protein.	PCI domain-containing protein.	0.856
CRE_01016	CRE_12205	E3MIE0	E3N091	Uncharacterized protein.	PCI domain-containing protein.	0.869
CRE_01016	CRE_14579	E3MIE0	E3M9M3	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.896
CRE_01016	CRE_14692	E3MIE0	E3M9L9	Uncharacterized protein.	Uncharacterized protein.	0.844
CRE_01016	CRE_15697	E3MIE0	E3N889	Uncharacterized protein.	Ribosomal_L40e domain-containing protein.	0.687
CRE_01016	CRE_20353	E3MIE0	E3MCX3	Uncharacterized protein.	Uncharacterized protein.	0.753
CRE_01016	CRE_22877	E3MIE0	E3MHB8	Uncharacterized protein.	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.	0.983
CRE_01016	CRE_23600	E3MIE0	E3MVR7	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.896
CRE_01016	CRE_25761	E3MIE0	E3N5P8	Uncharacterized protein.	PCI domain-containing protein.	0.887
CRE_01016	CRE_25974	E3MIE0	E3NMZ7	Uncharacterized protein.	AAA_lid_3 domain-containing protein.	0.830
CRE_01016	CRE_26482	E3MIE0	E3LQR9	Uncharacterized protein.	Uncharacterized protein.	0.717
CRE_01016	CRE_28272	E3MIE0	E3LN27	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.830
CRE_01016	CRE_28562	E3MIE0	E3LN24	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.830
CRE_01016	Cre-elb-1	E3MIE0	E3MIG0	Uncharacterized protein.	CRE-ELB-1 protein.	0.678
CRE_01016	Cre-elc-2	E3MIE0	E3MNK3	Uncharacterized protein.	CRE-ELC-2 protein; Belongs to the SKP1 family.	0.669
CRE_01016	Cre-hif-1	E3MIE0	E3MF08	Uncharacterized protein.	CRE-HIF-1 protein.	0.690