23 items (Caenorhabditis remanei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-ubl-1	CRE-UBL-1 protein. (160 aa)
	CRE_19220	Ubiquitin-like domain-containing protein. (81 aa)
	Cre-rpn-8	CRE-RPN-8 protein. (362 aa)
	Cre-pdk-1	CRE-PDK-1 protein. (629 aa)
	CRE_08086	Uncharacterized protein. (70 aa)
	Cre-mom-4	CRE-MOM-4 protein. (500 aa)
	Cre-ubq-1	CRE-UBQ-1 protein. (920 aa)
	Cre-rpn-2	26S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family. (978 aa)
	Cre-ubq-2	CRE-UBQ-2 protein. (128 aa)
	Cre-pas-4	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (253 aa)
	Cre-pas-6	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (271 aa)
	Cre-zak-1	CRE-ZAK-1 protein. (758 aa)
	Cre-lin-23	CRE-LIN-23 protein. (672 aa)
	CRE_26198	Uncharacterized protein. (638 aa)
	CRE_28630	TMEM189_B_dmain domain-containing protein. (363 aa)
	Cre-rpt-5	CRE-RPT-5 protein; Belongs to the AAA ATPase family. (430 aa)
	CRE_27959	KxDL domain-containing protein. (114 aa)
	CRE_30231	Protein kinase domain-containing protein. (820 aa)
	CRE_15697	Ribosomal_L40e domain-containing protein. (62 aa)
	CRE_23005	Protein kinase domain-containing protein. (279 aa)
	Cre-pbs-2	CRE-PBS-2 protein. (290 aa)
	CRE_14909	KxDL domain-containing protein. (72 aa)
	Cre-pbs-5	CRE-PBS-5 protein. (284 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_08086	CRE_15697	E3M3B3	E3N889	Uncharacterized protein.	Ribosomal_L40e domain-containing protein.	0.794
CRE_08086	CRE_19220	E3M3B3	E3MJI2	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.740
CRE_08086	CRE_23005	E3M3B3	E3N4F5	Uncharacterized protein.	Protein kinase domain-containing protein.	0.728
CRE_08086	CRE_26198	E3M3B3	E3LQQ4	Uncharacterized protein.	Uncharacterized protein.	0.813
CRE_08086	CRE_28630	E3M3B3	E3LNC3	Uncharacterized protein.	TMEM189_B_dmain domain-containing protein.	0.478
CRE_08086	CRE_30231	E3M3B3	E3NJC8	Uncharacterized protein.	Protein kinase domain-containing protein.	0.728
CRE_08086	Cre-lin-23	E3M3B3	E3LR63	Uncharacterized protein.	CRE-LIN-23 protein.	0.527
CRE_08086	Cre-pdk-1	E3M3B3	E3MA10	Uncharacterized protein.	CRE-PDK-1 protein.	0.775
CRE_08086	Cre-ubl-1	E3M3B3	E3MWD1	Uncharacterized protein.	CRE-UBL-1 protein.	0.798
CRE_08086	Cre-ubq-1	E3M3B3	E3LYQ5	Uncharacterized protein.	CRE-UBQ-1 protein.	0.839
CRE_08086	Cre-ubq-2	E3M3B3	E3LW77	Uncharacterized protein.	CRE-UBQ-2 protein.	0.794
CRE_14909	CRE_19220	E3N1U1	E3MJI2	KxDL domain-containing protein.	Ubiquitin-like domain-containing protein.	0.725
CRE_14909	Cre-ubl-1	E3N1U1	E3MWD1	KxDL domain-containing protein.	CRE-UBL-1 protein.	0.845
CRE_14909	Cre-ubq-1	E3N1U1	E3LYQ5	KxDL domain-containing protein.	CRE-UBQ-1 protein.	0.727
CRE_15697	CRE_08086	E3N889	E3M3B3	Ribosomal_L40e domain-containing protein.	Uncharacterized protein.	0.794
CRE_15697	CRE_19220	E3N889	E3MJI2	Ribosomal_L40e domain-containing protein.	Ubiquitin-like domain-containing protein.	0.993
CRE_15697	CRE_26198	E3N889	E3LQQ4	Ribosomal_L40e domain-containing protein.	Uncharacterized protein.	0.493
CRE_15697	CRE_28630	E3N889	E3LNC3	Ribosomal_L40e domain-containing protein.	TMEM189_B_dmain domain-containing protein.	0.938
CRE_15697	Cre-lin-23	E3N889	E3LR63	Ribosomal_L40e domain-containing protein.	CRE-LIN-23 protein.	0.880
CRE_15697	Cre-mom-4	E3N889	E3M3B1	Ribosomal_L40e domain-containing protein.	CRE-MOM-4 protein.	0.794