21 items (Caenorhabditis remanei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-ubl-1	CRE-UBL-1 protein. (160 aa)
	Cre-pbs-5	CRE-PBS-5 protein. (284 aa)
	CRE_14909	KxDL domain-containing protein. (72 aa)
	Cre-pbs-2	CRE-PBS-2 protein. (290 aa)
	CRE_15697	Ribosomal_L40e domain-containing protein. (62 aa)
	CRE_10682	DDE Tnp4 domain-containing protein. (486 aa)
	CRE_02725	DDE Tnp4 domain-containing protein. (382 aa)
	CRE_27959	KxDL domain-containing protein. (114 aa)
	Cre-rpt-5	CRE-RPT-5 protein; Belongs to the AAA ATPase family. (430 aa)
	CRE_26198	Uncharacterized protein. (638 aa)
	Cre-lin-23	CRE-LIN-23 protein. (672 aa)
	Cre-zak-1	CRE-ZAK-1 protein. (758 aa)
	Cre-pas-6	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (271 aa)
	Cre-pas-4	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (253 aa)
	Cre-ubq-2	CRE-UBQ-2 protein. (128 aa)
	Cre-rpn-2	26S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family. (978 aa)
	Cre-ubq-1	CRE-UBQ-1 protein. (920 aa)
	Cre-mom-4	CRE-MOM-4 protein. (500 aa)
	CRE_08086	Uncharacterized protein. (70 aa)
	Cre-tap-1	CRE-TAP-1 protein. (388 aa)
	Cre-rpn-8	CRE-RPN-8 protein. (362 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_08086	CRE_15697	E3M3B3	E3N889	Uncharacterized protein.	Ribosomal_L40e domain-containing protein.	0.794
CRE_08086	CRE_26198	E3M3B3	E3LQQ4	Uncharacterized protein.	Uncharacterized protein.	0.813
CRE_08086	Cre-lin-23	E3M3B3	E3LR63	Uncharacterized protein.	CRE-LIN-23 protein.	0.527
CRE_08086	Cre-tap-1	E3M3B3	E3MC22	Uncharacterized protein.	CRE-TAP-1 protein.	0.993
CRE_08086	Cre-ubl-1	E3M3B3	E3MWD1	Uncharacterized protein.	CRE-UBL-1 protein.	0.798
CRE_08086	Cre-ubq-1	E3M3B3	E3LYQ5	Uncharacterized protein.	CRE-UBQ-1 protein.	0.839
CRE_08086	Cre-ubq-2	E3M3B3	E3LW77	Uncharacterized protein.	CRE-UBQ-2 protein.	0.794
CRE_14909	Cre-ubl-1	E3N1U1	E3MWD1	KxDL domain-containing protein.	CRE-UBL-1 protein.	0.845
CRE_14909	Cre-ubq-1	E3N1U1	E3LYQ5	KxDL domain-containing protein.	CRE-UBQ-1 protein.	0.727
CRE_15697	CRE_08086	E3N889	E3M3B3	Ribosomal_L40e domain-containing protein.	Uncharacterized protein.	0.794
CRE_15697	CRE_26198	E3N889	E3LQQ4	Ribosomal_L40e domain-containing protein.	Uncharacterized protein.	0.493
CRE_15697	Cre-lin-23	E3N889	E3LR63	Ribosomal_L40e domain-containing protein.	CRE-LIN-23 protein.	0.880
CRE_15697	Cre-mom-4	E3N889	E3M3B1	Ribosomal_L40e domain-containing protein.	CRE-MOM-4 protein.	0.794
CRE_15697	Cre-pas-4	E3N889	E3LVJ7	Ribosomal_L40e domain-containing protein.	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.	0.951
CRE_15697	Cre-pas-6	E3N889	E3LUB3	Ribosomal_L40e domain-containing protein.	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.	0.969
CRE_15697	Cre-pbs-2	E3N889	E3N2P4	Ribosomal_L40e domain-containing protein.	CRE-PBS-2 protein.	0.957
CRE_15697	Cre-pbs-5	E3N889	E3N1M6	Ribosomal_L40e domain-containing protein.	CRE-PBS-5 protein.	0.960
CRE_15697	Cre-rpn-2	E3N889	E3LWQ4	Ribosomal_L40e domain-containing protein.	26S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family.	0.965
CRE_15697	Cre-rpn-8	E3N889	E3MGH3	Ribosomal_L40e domain-containing protein.	CRE-RPN-8 protein.	0.964
CRE_15697	Cre-rpt-5	E3N889	E3LMJ8	Ribosomal_L40e domain-containing protein.	CRE-RPT-5 protein; Belongs to the AAA ATPase family.	0.963