64 items (Caenorhabditis remanei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-rpt-2	CRE-RPT-2 protein; Belongs to the AAA ATPase family. (443 aa)
	Cre-rpn-10	CRE-RPN-10 protein. (350 aa)
	CRE_28272	AAA domain-containing protein; Belongs to the AAA ATPase family. (409 aa)
	CRE_27101	BLM10_mid domain-containing protein. (729 aa)
	Cre-rpt-5	CRE-RPT-5 protein; Belongs to the AAA ATPase family. (430 aa)
	Cre-xpo-1	CRE-XPO-1 protein. (923 aa)
	CRE_18945	CRM1_C domain-containing protein. (189 aa)
	CRE_09394	AAA domain-containing protein; Belongs to the AAA ATPase family. (416 aa)
	Cre-pas-7	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (250 aa)
	CRE_01891	Uncharacterized protein. (161 aa)
	CRE_27102	DUF3437 domain-containing protein. (649 aa)
	CRE_27134	Uncharacterized protein. (1926 aa)
	Cre-rpt-1	CRE-RPT-1 protein; Belongs to the AAA ATPase family. (435 aa)
	Cre-rpn-9	CRE-RPN-9 protein. (390 aa)
	Cre-rpn-12	CRE-RPN-12 protein. (250 aa)
	CRE_23600	AAA domain-containing protein; Belongs to the AAA ATPase family. (329 aa)
	Cre-rpn-5	CRE-RPN-5 protein. (507 aa)
	CRE_27745	BLM10_mid domain-containing protein. (816 aa)
	CRE_27746	DUF3437 domain-containing protein. (1052 aa)
	CRE_08432	Uncharacterized protein. (1881 aa)
	Cre-pbs-5	CRE-PBS-5 protein. (284 aa)
	CRE_14909	KxDL domain-containing protein. (72 aa)
	Cre-rpt-4	CRE-RPT-4 protein; Belongs to the AAA ATPase family. (492 aa)
	Cre-pbs-2	CRE-PBS-2 protein. (290 aa)
	CRE_21970	Uncharacterized protein. (98 aa)
	CRE_23006	Uncharacterized protein. (165 aa)
	CRE_29158	Uncharacterized protein. (68 aa)
	CRE_29166	Uncharacterized protein. (68 aa)
	Cre-pbs-1	Proteasome subunit beta. (239 aa)
	Cre-rpt-6	CRE-RPT-6 protein; Belongs to the AAA ATPase family. (408 aa)
	CRE_22714	Uncharacterized protein. (117 aa)
	CRE_25974	AAA_lid_3 domain-containing protein. (114 aa)
	CRE_11553	Uncharacterized protein. (460 aa)
	CRE_27959	KxDL domain-containing protein. (114 aa)
	CRE_28562	Uncharacterized protein; Belongs to the AAA ATPase family. (309 aa)
	Cre-pbs-7	Proteasome subunit beta; Belongs to the peptidase T1B family. (236 aa)
	Cre-pas-4	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (253 aa)
	Cre-pas-5	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (258 aa)
	Cre-rpn-2	26S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family. (978 aa)
	CRE_03184	AAA domain-containing protein; Belongs to the AAA ATPase family. (443 aa)
	Cre-ubq-1	CRE-UBQ-1 protein. (920 aa)
	CRE_06288	MPN domain-containing protein. (323 aa)
	Cre-pbs-3	Proteasome subunit beta. (204 aa)
	Cre-cdc-14	CRE-CDC-14 protein. (767 aa)
	CRE_11090	PCI domain-containing protein. (489 aa)
	CRE_12700	Uncharacterized protein. (460 aa)
	Cre-kin-1	CRE-KIN-1 protein. (644 aa)
	Cre-max-2	Non-specific serine/threonine protein kinase. (637 aa)
	CRE_00858	Uncharacterized protein; Belongs to the protein kinase superfamily. (371 aa)
	Cre-pak-1	Non-specific serine/threonine protein kinase. (570 aa)
	CRE_00134	Uncharacterized protein. (67 aa)
	CRE_26482	Uncharacterized protein. (197 aa)
	Cre-rpn-11	CRE-RPN-11 protein. (312 aa)
	CRE_19220	Ubiquitin-like domain-containing protein. (81 aa)
	Cre-rpn-3	CRE-RPN-3 protein. (506 aa)
	Cre-rpn-8	CRE-RPN-8 protein. (362 aa)
	Cre-unc-73	CRE-UNC-73 protein. (2483 aa)
	Cre-pbs-4	Proteasome subunit beta. (204 aa)
	Cre-sad-1	CRE-SAD-1 protein. (925 aa)
	CRE_20353	Uncharacterized protein. (507 aa)
	CRE_16775	Uncharacterized protein. (118 aa)
	Cre-pas-6	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (271 aa)
	CRE_14579	AAA domain-containing protein; Belongs to the AAA ATPase family. (404 aa)
	CRE_14692	Uncharacterized protein. (89 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_00134	CRE_06288	E3LDB7	E3M0Y8	Uncharacterized protein.	MPN domain-containing protein.	0.577
CRE_00134	CRE_19220	E3LDB7	E3MJI2	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.521
CRE_00134	Cre-rpn-11	E3LDB7	E3MQH8	Uncharacterized protein.	CRE-RPN-11 protein.	0.577
CRE_01891	CRE_06288	E3LG38	E3M0Y8	Uncharacterized protein.	MPN domain-containing protein.	0.577
CRE_01891	CRE_19220	E3LG38	E3MJI2	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.521
CRE_01891	Cre-rpn-11	E3LG38	E3MQH8	Uncharacterized protein.	CRE-RPN-11 protein.	0.577
CRE_03184	CRE_06288	E3LX06	E3M0Y8	AAA domain-containing protein; Belongs to the AAA ATPase family.	MPN domain-containing protein.	0.995
CRE_03184	CRE_08432	E3LX06	E3MZZ4	AAA domain-containing protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.786
CRE_03184	CRE_09394	E3LX06	E3LIK9	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.921
CRE_03184	CRE_11090	E3LX06	E3M5G9	AAA domain-containing protein; Belongs to the AAA ATPase family.	PCI domain-containing protein.	0.988
CRE_03184	CRE_14579	E3LX06	E3M9M3	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.975
CRE_03184	CRE_14692	E3LX06	E3M9L9	AAA domain-containing protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.972
CRE_03184	CRE_19220	E3LX06	E3MJI2	AAA domain-containing protein; Belongs to the AAA ATPase family.	Ubiquitin-like domain-containing protein.	0.948
CRE_03184	CRE_20353	E3LX06	E3MCX3	AAA domain-containing protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.975
CRE_03184	CRE_21970	E3LX06	E3N3D1	AAA domain-containing protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.786
CRE_03184	CRE_23600	E3LX06	E3MVR7	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.974
CRE_03184	CRE_25974	E3LX06	E3NMZ7	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA_lid_3 domain-containing protein.	0.980
CRE_03184	CRE_26482	E3LX06	E3LQR9	AAA domain-containing protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.978
CRE_03184	CRE_27101	E3LX06	E3LNF3	AAA domain-containing protein; Belongs to the AAA ATPase family.	BLM10_mid domain-containing protein.	0.786
CRE_03184	CRE_27102	E3LX06	E3LNF4	AAA domain-containing protein; Belongs to the AAA ATPase family.	DUF3437 domain-containing protein.	0.786