STRINGSTRING
ychF ychF NSP_8340 NSP_8340 NSP_6910 NSP_6910 NSP_6900 NSP_6900 NSP_640 NSP_640 NSP_6340 NSP_6340 NSP_53100 NSP_53100 NSP_52800 NSP_52800 NSP_51560 NSP_51560 NSP_50770 NSP_50770 NSP_45680 NSP_45680 NSP_4550 NSP_4550 NSP_45250 NSP_45250 NSP_44590 NSP_44590 NSP_42480 NSP_42480 NSP_42030 NSP_42030 NSP_41810 NSP_41810 NSP_41720 NSP_41720 NSP_40680 NSP_40680 NSP_37340 NSP_37340 NSP_36790 NSP_36790 NSP_36770 NSP_36770 NSP_35020 NSP_35020 NSP_32750 NSP_32750 NSP_28440 NSP_28440 NSP_28130 NSP_28130 sbcD sbcD NSP_27330 NSP_27330 NSP_27090 NSP_27090 NSP_2610 NSP_2610 NSP_19010 NSP_19010 tadA tadA NSP_18080 NSP_18080 NSP_17500 NSP_17500 NSP_13430 NSP_13430 NSP_10410 NSP_10410
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ychFGTP-binding and nucleic acid-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (363 aa)
NSP_8340ADP-ribosylglycohydrolase; Nsp8340; ORF_ID:nsp8340. (304 aa)
NSP_6910Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal; Nsp6910; ORF_ID:nsp6910. (418 aa)
NSP_6900Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal; Nsp6900; ORF_ID:nsp6900. (152 aa)
NSP_640Cell division inhibitor; Nsp640; ORF_ID:nsp640. (306 aa)
NSP_6340Cysteine desulfurase; Nsp6340; ORF_ID:nsp6340; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (388 aa)
NSP_53100RNA-binding protein; Nsp53100; ORF_ID:nsp53100. (106 aa)
NSP_52800Cytosine deaminase; Nsp52800; ORF_ID:nsp52800. (143 aa)
NSP_51560Hypothetical protein; Nsp51560; ORF_ID:nsp51560. (523 aa)
NSP_50770RNA-binding protein; Nsp50770; ORF_ID:nsp50770. (165 aa)
NSP_45680Hypothetical protein; Nsp45680; ORF_ID:nsp45680. (318 aa)
NSP_4550GTPase; Nsp4550; ORF_ID:nsp4550. (520 aa)
NSP_45250Hypothetical protein; Nsp45250; ORF_ID:nsp45250. (125 aa)
NSP_44590Hypothetical protein; Nsp44590; ORF_ID:nsp44590. (137 aa)
NSP_42480Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (156 aa)
NSP_42030N-acetyl-L,L-diaminopimelate deacetylase-like protein; Nsp42030; ORF_ID:nsp42030. (410 aa)
NSP_41810Glutathione S-transferase, omega; Nsp41810; ORF_ID:nsp41810. (323 aa)
NSP_41720N-acyl-L-amino acid amidohydrolase; Nsp41720; ORF_ID:nsp41720. (391 aa)
NSP_40680Cysteine desulfurase, NifS subfamily; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. (400 aa)
NSP_37340Cysteine desulfurase; Nsp37340; ORF_ID:nsp37340. (383 aa)
NSP_36790Cleavage and polyadenylation specificity factor, 73 kDa subunit; Nsp36790; ORF_ID:nsp36790. (601 aa)
NSP_36770Acetamidase; Nsp36770; ORF_ID:nsp36770. (320 aa)
NSP_35020Putative transcripton factor for heterocyst differentiation DevT; Nsp35020; ORF_ID:nsp35020. (333 aa)
NSP_32750N-acetyl-L,L-diaminopimelate deacetylase-like protein; Nsp32750; ORF_ID:nsp32750. (216 aa)
NSP_28440N-acetyl-L,L-diaminopimelate deacetylase-like protein; Nsp28440; ORF_ID:nsp28440. (399 aa)
NSP_28130Cysteine desulfurase; Nsp28130; ORF_ID:nsp28130. (420 aa)
sbcDExonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (417 aa)
NSP_27330tRNA-specific adenosine-34 deaminase; Nsp27330; ORF_ID:nsp27330. (143 aa)
NSP_27090Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal; Nsp27090; ORF_ID:nsp27090. (2169 aa)
NSP_2610Hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. (147 aa)
NSP_19010RNA-binding protein; Nsp19010; ORF_ID:nsp19010. (102 aa)
tadAtRNA-specific adenosine-34 deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (164 aa)
NSP_18080YrbA protein; Nsp18080; ORF_ID:nsp18080; Belongs to the BolA/IbaG family. (85 aa)
NSP_17500RNA-binding protein; Nsp17500; ORF_ID:nsp17500. (51 aa)
NSP_13430Inactivated Zn-dependent hydrolase of the beta-lactamase fold; Nsp13430; ORF_ID:nsp13430. (259 aa)
NSP_10410Hypothetical protein; Nsp10410; ORF_ID:nsp10410. (488 aa)
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
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