32 items (Nodularia spumigena) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NSP_13590	Acyl carrier protein; Nsp13590; ORF_ID:nsp13590. (101 aa)
	NSP_13650	Heterocyst glycolipid synthase; Nsp13650; ORF_ID:nsp13650. (2330 aa)
	acpP	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. (251 aa)
	acpP-2	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. (85 aa)
	NSP_26710	Malonyl CoA-acyl carrier protein transacylase; Nsp26710; ORF_ID:nsp26710. (2478 aa)
	NSP_26720	Malonyl CoA-acyl carrier protein transacylase; Nsp26720; ORF_ID:nsp26720. (2471 aa)
	NSP_26730	Long-chain-fatty-acid--CoA ligase; Nsp26730; ORF_ID:nsp26730. (1205 aa)
	NSP_26910	Long-chain-fatty-acid--CoA ligase; Nsp26910; ORF_ID:nsp26910. (1650 aa)
	NSP_26920	Long-chain-fatty-acid--CoA ligase; Nsp26920; ORF_ID:nsp26920. (2595 aa)
	NSP_26930	Long-chain-fatty-acid--CoA ligase; Nsp26930; ORF_ID:nsp26930. (1077 aa)
	NSP_26940	Malonyl CoA-acyl carrier protein transacylase; Nsp26940; ORF_ID:nsp26940. (1505 aa)
	NSP_26950	Long-chain-fatty-acid--CoA ligase; Nsp26950; ORF_ID:nsp26950. (2436 aa)
	NSP_26960	Long-chain-fatty-acid--CoA ligase; Nsp26960; ORF_ID:nsp26960. (2621 aa)
	NSP_26980	Long-chain-fatty-acid--CoA ligase; Nsp26980; ORF_ID:nsp26980. (1088 aa)
	NSP_26990	Multifunctional peptide synthetase; Nsp26990; ORF_ID:nsp26990. (1161 aa)
	NSP_27060	Malonyl CoA-acyl carrier protein transacylase; Nsp27060; ORF_ID:nsp27060. (1584 aa)
	NSP_42130	Hypothetical protein; Nsp42130; ORF_ID:nsp42130; Belongs to the ATP-dependent AMP-binding enzyme family. (1299 aa)
	NSP_42140	Long-chain-fatty-acid--CoA ligase; Nsp42140; ORF_ID:nsp42140. (2607 aa)
	NSP_42150	Malonyl CoA-acyl carrier protein transacylase; Nsp42150; ORF_ID:nsp42150. (2640 aa)
	NSP_42160	Malonyl CoA-acyl carrier protein transacylase; Nsp42160; ORF_ID:nsp42160. (3873 aa)
	NSP_42180	Malonyl CoA-acyl carrier protein transacylase; Nsp42180; ORF_ID:nsp42180. (3475 aa)
	NSP_46290	Polyketide synthase; Nsp46290; ORF_ID:nsp46290. (497 aa)
	NSP_46340	Heterocyst glycolipid synthase; Nsp46340; ORF_ID:nsp46340. (1697 aa)
	NSP_49230	Long-chain-fatty-acid--CoA ligase; Nsp49230; ORF_ID:nsp49230. (4171 aa)
	NSP_49240	Lichenysin synthetase A; Nsp49240; ORF_ID:nsp49240. (266 aa)
	NSP_49350	Long-chain-fatty-acid--CoA ligase; Nsp49350; ORF_ID:nsp49350. (2195 aa)
	NSP_49360	Long-chain-fatty-acid--CoA ligase; Nsp49360; ORF_ID:nsp49360. (1075 aa)
	NSP_49370	Long-chain-fatty-acid--CoA ligase; Nsp49370; ORF_ID:nsp49370. (2558 aa)
	NSP_49380	Long-chain-fatty-acid--CoA ligase; Nsp49380; ORF_ID:nsp49380. (1394 aa)
	NSP_50530	Long-chain-fatty-acid--CoA ligase; Nsp50530; ORF_ID:nsp50530. (1490 aa)
	NSP_50540	Long-chain-fatty-acid--CoA ligase; Nsp50540; ORF_ID:nsp50540; Belongs to the ATP-dependent AMP-binding enzyme family. (1518 aa)
	NSP_50580	Long-chain-fatty-acid--CoA ligase; Nsp50580; ORF_ID:nsp50580. (1090 aa)

Your Current Organism:

Nodularia spumigena

NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NSP_13590	NSP_13650	NSP_13590	NSP_13650	Acyl carrier protein; Nsp13590; ORF_ID:nsp13590.	Heterocyst glycolipid synthase; Nsp13650; ORF_ID:nsp13650.	0.764
NSP_13590	NSP_26710	NSP_13590	NSP_26710	Acyl carrier protein; Nsp13590; ORF_ID:nsp13590.	Malonyl CoA-acyl carrier protein transacylase; Nsp26710; ORF_ID:nsp26710.	0.886
NSP_13590	NSP_26720	NSP_13590	NSP_26720	Acyl carrier protein; Nsp13590; ORF_ID:nsp13590.	Malonyl CoA-acyl carrier protein transacylase; Nsp26720; ORF_ID:nsp26720.	0.958
NSP_13590	NSP_26730	NSP_13590	NSP_26730	Acyl carrier protein; Nsp13590; ORF_ID:nsp13590.	Long-chain-fatty-acid--CoA ligase; Nsp26730; ORF_ID:nsp26730.	0.913
NSP_13590	NSP_26910	NSP_13590	NSP_26910	Acyl carrier protein; Nsp13590; ORF_ID:nsp13590.	Long-chain-fatty-acid--CoA ligase; Nsp26910; ORF_ID:nsp26910.	0.878
NSP_13590	NSP_26920	NSP_13590	NSP_26920	Acyl carrier protein; Nsp13590; ORF_ID:nsp13590.	Long-chain-fatty-acid--CoA ligase; Nsp26920; ORF_ID:nsp26920.	0.963
NSP_13590	NSP_26930	NSP_13590	NSP_26930	Acyl carrier protein; Nsp13590; ORF_ID:nsp13590.	Long-chain-fatty-acid--CoA ligase; Nsp26930; ORF_ID:nsp26930.	0.450
NSP_13590	NSP_26940	NSP_13590	NSP_26940	Acyl carrier protein; Nsp13590; ORF_ID:nsp13590.	Malonyl CoA-acyl carrier protein transacylase; Nsp26940; ORF_ID:nsp26940.	0.922
NSP_13590	NSP_26950	NSP_13590	NSP_26950	Acyl carrier protein; Nsp13590; ORF_ID:nsp13590.	Long-chain-fatty-acid--CoA ligase; Nsp26950; ORF_ID:nsp26950.	0.939
NSP_13590	NSP_26960	NSP_13590	NSP_26960	Acyl carrier protein; Nsp13590; ORF_ID:nsp13590.	Long-chain-fatty-acid--CoA ligase; Nsp26960; ORF_ID:nsp26960.	0.860
NSP_13590	NSP_26980	NSP_13590	NSP_26980	Acyl carrier protein; Nsp13590; ORF_ID:nsp13590.	Long-chain-fatty-acid--CoA ligase; Nsp26980; ORF_ID:nsp26980.	0.467
NSP_13590	NSP_26990	NSP_13590	NSP_26990	Acyl carrier protein; Nsp13590; ORF_ID:nsp13590.	Multifunctional peptide synthetase; Nsp26990; ORF_ID:nsp26990.	0.471
NSP_13590	NSP_27060	NSP_13590	NSP_27060	Acyl carrier protein; Nsp13590; ORF_ID:nsp13590.	Malonyl CoA-acyl carrier protein transacylase; Nsp27060; ORF_ID:nsp27060.	0.757
NSP_13590	NSP_42130	NSP_13590	NSP_42130	Acyl carrier protein; Nsp13590; ORF_ID:nsp13590.	Hypothetical protein; Nsp42130; ORF_ID:nsp42130; Belongs to the ATP-dependent AMP-binding enzyme family.	0.996
NSP_13590	NSP_42140	NSP_13590	NSP_42140	Acyl carrier protein; Nsp13590; ORF_ID:nsp13590.	Long-chain-fatty-acid--CoA ligase; Nsp42140; ORF_ID:nsp42140.	0.877
NSP_13590	NSP_42150	NSP_13590	NSP_42150	Acyl carrier protein; Nsp13590; ORF_ID:nsp13590.	Malonyl CoA-acyl carrier protein transacylase; Nsp42150; ORF_ID:nsp42150.	0.968
NSP_13590	NSP_42160	NSP_13590	NSP_42160	Acyl carrier protein; Nsp13590; ORF_ID:nsp13590.	Malonyl CoA-acyl carrier protein transacylase; Nsp42160; ORF_ID:nsp42160.	0.972
NSP_13590	NSP_42180	NSP_13590	NSP_42180	Acyl carrier protein; Nsp13590; ORF_ID:nsp13590.	Malonyl CoA-acyl carrier protein transacylase; Nsp42180; ORF_ID:nsp42180.	0.918
NSP_13590	NSP_46290	NSP_13590	NSP_46290	Acyl carrier protein; Nsp13590; ORF_ID:nsp13590.	Polyketide synthase; Nsp46290; ORF_ID:nsp46290.	0.499
NSP_13590	NSP_46340	NSP_13590	NSP_46340	Acyl carrier protein; Nsp13590; ORF_ID:nsp13590.	Heterocyst glycolipid synthase; Nsp46340; ORF_ID:nsp46340.	0.740