Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EAU43573.1 | EAU44097.1 | R2601_24130 | R2601_12081 | COG1200 RecG-like helicase. | COG0514 Superfamily II DNA helicase. | 0.696 |
| EAU43573.1 | EAU44201.1 | R2601_24130 | R2601_27198 | COG1200 RecG-like helicase. | COG0210 Superfamily I DNA and RNA helicases. | 0.679 |
| EAU43573.1 | EAU44635.1 | R2601_24130 | R2601_24245 | COG1200 RecG-like helicase. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.536 |
| EAU43573.1 | EAU46370.1 | R2601_24130 | R2601_09952 | COG1200 RecG-like helicase. | Competence protein ComM; COG0606 Predicted ATPase with chaperone activity. | 0.400 |
| EAU43573.1 | EAU48273.1 | R2601_24130 | R2601_14945 | COG1200 RecG-like helicase. | ATP-dependent DNA helicase, UvrD/Rep family protein; COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); Belongs to the helicase family. UvrD subfamily. | 0.463 |
| EAU43573.1 | ruvA | R2601_24130 | R2601_17032 | COG1200 RecG-like helicase. | Holliday junction DNA helicase motor protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.733 |
| EAU43573.1 | ruvB | R2601_24130 | R2601_17037 | COG1200 RecG-like helicase. | Holliday junction DNA helicase B; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.655 |
| EAU43573.1 | topA | R2601_24130 | R2601_17824 | COG1200 RecG-like helicase. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.770 |
| EAU44097.1 | EAU43573.1 | R2601_12081 | R2601_24130 | COG0514 Superfamily II DNA helicase. | COG1200 RecG-like helicase. | 0.696 |
| EAU44097.1 | EAU44117.1 | R2601_12081 | R2601_12181 | COG0514 Superfamily II DNA helicase. | COG0210 Superfamily I DNA and RNA helicases. | 0.967 |
| EAU44097.1 | EAU44201.1 | R2601_12081 | R2601_27198 | COG0514 Superfamily II DNA helicase. | COG0210 Superfamily I DNA and RNA helicases. | 0.967 |
| EAU44097.1 | EAU44334.1 | R2601_12081 | R2601_07438 | COG0514 Superfamily II DNA helicase. | Nickase; COG3843 Type IV secretory pathway, VirD2 components (relaxase). | 0.857 |
| EAU44097.1 | EAU44635.1 | R2601_12081 | R2601_24245 | COG0514 Superfamily II DNA helicase. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.426 |
| EAU44097.1 | EAU46378.1 | R2601_12081 | R2601_09992 | COG0514 Superfamily II DNA helicase. | Putative DNA topoisomerase I protein; COG3569 Topoisomerase IB. | 0.941 |
| EAU44097.1 | EAU48273.1 | R2601_12081 | R2601_14945 | COG0514 Superfamily II DNA helicase. | ATP-dependent DNA helicase, UvrD/Rep family protein; COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); Belongs to the helicase family. UvrD subfamily. | 0.715 |
| EAU44097.1 | gyrB | R2601_12081 | R2601_14410 | COG0514 Superfamily II DNA helicase. | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.801 |
| EAU44097.1 | parE | R2601_12081 | R2601_07796 | COG0514 Superfamily II DNA helicase. | DNA topoisomerase IV subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. | 0.800 |
| EAU44097.1 | ruvA | R2601_12081 | R2601_17032 | COG0514 Superfamily II DNA helicase. | Holliday junction DNA helicase motor protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.460 |
| EAU44097.1 | topA | R2601_12081 | R2601_17824 | COG0514 Superfamily II DNA helicase. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.996 |
| EAU44117.1 | EAU44097.1 | R2601_12181 | R2601_12081 | COG0210 Superfamily I DNA and RNA helicases. | COG0514 Superfamily II DNA helicase. | 0.967 |
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