STRINGSTRING
nuoM nuoM ctaG ctaG frdB frdB nuoI nuoI petA petA EDZ41188.1 EDZ41188.1 phaD phaD nuoH nuoH ccoS ccoS nuoJ nuoJ RB2083_49 RB2083_49 nuoE_1 nuoE_1 EDZ44613.1 EDZ44613.1 atpF_1 atpF_1 atpD atpD cyoE cyoE sdhD sdhD EDZ44422.1 EDZ44422.1 ccoP ccoP EDZ44233.1 EDZ44233.1 EDZ44073.1 EDZ44073.1 ppaC ppaC EDZ40828.1 EDZ40828.1 ppk_1 ppk_1 cydB cydB coxB coxB EDZ43612.1 EDZ43612.1 ccoN ccoN phaC phaC ccoO ccoO EDZ40790.1 EDZ40790.1 EDZ43415.1 EDZ43415.1 petC petC nuoE_2 nuoE_2 atpG atpG ppk_2 ppk_2 rbfA rbfA EDZ43094.1 EDZ43094.1 nuoC nuoC atpE atpE nuoG nuoG nuoD nuoD EDZ42867.1 EDZ42867.1 EDZ42829.1 EDZ42829.1 nuoB nuoB sdhB sdhB ctaA ctaA nuoN nuoN atpC atpC EDZ42301.1 EDZ42301.1 sdhC_1 sdhC_1 EDZ42262.1 EDZ42262.1 EDZ42158.1 EDZ42158.1 atpF_2 atpF_2 ctaD ctaD atpB atpB nuoA nuoA EDZ41753.1 EDZ41753.1 nuoK nuoK EDZ41653.1 EDZ41653.1 EDZ40597.1 EDZ40597.1 EDZ41585.1 EDZ41585.1 atpA atpA sdhA sdhA sdhC_2 sdhC_2
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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nuoM[C] COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M). (514 aa)
ctaGCytochrome c oxidase assembly protein CtaG; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family. (202 aa)
frdB[C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit. (237 aa)
nuoINADH-ubiquinone oxidoreductase (complex i) subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (164 aa)
petAUbiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (190 aa)
EDZ41188.1Cytochrome B/c1; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (441 aa)
phaDpH adaption potassium efflux system protein; [CP] COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit; overlaps another CDS with the same product name. (514 aa)
nuoHNADH-quinone oxidoreductase subunit h; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone. (346 aa)
ccoSCytochrome oxidase maturation protein, cbb3-type; [P] COG3197 Uncharacterized protein, possibly involved in nitrogen fixation. (45 aa)
nuoJNADH-quinone oxidoreductase chain j; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (202 aa)
RB2083_49[C] COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit. (585 aa)
nuoE_1NADH dehydrogenase-ubiquinone oxidoreductase, chain e; [C] COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit. (384 aa)
EDZ44613.1Proton-translocating NADH-quinone oxidoreductase, chain L subfamily; [CP] COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit. (703 aa)
atpF_1ATP synthase F0, B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. (160 aa)
atpDATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. (474 aa)
cyoEProtoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group; Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily. (312 aa)
sdhD[C] COG2142 Succinate dehydrogenase, hydrophobic anchor subunit. (123 aa)
EDZ44422.1WbqC-like protein family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (233 aa)
ccoPCytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (287 aa)
EDZ44233.1Heme-copper respiratory oxidase family; [O] COG3278 Cbb3-type cytochrome oxidase, subunit 1. (463 aa)
EDZ44073.1Cytochrome bd ubiquinol oxidase, subunit I. (71 aa)
ppaCInorganic pyrophosphatase, manganese-dependent; [C] COG1227 Inorganic pyrophosphatase/exopolyphosphatase. (306 aa)
EDZ40828.1[C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3. (266 aa)
ppk_1Polyphosphate kinase 2; [S] COG2326 Uncharacterized conserved protein. (289 aa)
cydB[C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2. (68 aa)
coxBCytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (280 aa)
EDZ43612.1Na+/H+ antiporter family domain protein; [CP] COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit. (959 aa)
ccoN[C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; Belongs to the heme-copper respiratory oxidase family. (533 aa)
phaCpH adaption potassium efflux system protein; [P] COG1006 Multisubunit Na+/H+ antiporter, MnhC subunit; overlaps another CDS with the same product name. (95 aa)
ccoO[C] COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit. (241 aa)
EDZ40790.1Zinc protease; [R] COG0612 Predicted Zn-dependent peptidases. (435 aa)
EDZ43415.1[R] COG1026 Predicted Zn-dependent peptidases, insulinase-like; Belongs to the peptidase M16 family. (420 aa)
petC[C] COG2857 Cytochrome c1. (265 aa)
nuoE_2NADH:ubiquinone oxidoreductase 41 kd complex i subunit; [M] COG0739 Membrane proteins related to metalloendopeptidases. (295 aa)
atpGATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. (291 aa)
ppk_2Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. (726 aa)
rbfARibosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. (142 aa)
EDZ43094.13-ketosteroid dehydrogenase, putative; [H] COG0029 Aspartate oxidase. (459 aa)
nuoCNADH-quinone oxidoreductase, c subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family. (202 aa)
atpEATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. (74 aa)
nuoGNADH dehydrogenase (quinone), G subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (673 aa)
nuoDNADH dehydrogenase (quinone), D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. (407 aa)
EDZ42867.1Cytochrome c oxidase (b(o/a)3-type) chain II. (44 aa)
EDZ42829.1Cytochrome c oxidase, cbb3-type, CcoQ subunit, putative; [O] COG4736 Cbb3-type cytochrome oxidase, subunit 3. (78 aa)
nuoBNADH dehydrogenase-ubiquinone oxidoreductase, chain b; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (181 aa)
sdhB[C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (259 aa)
ctaACytochrome oxidase assembly; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily. (380 aa)
nuoNNADH-quinone oxidoreductase chain n; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. (447 aa)
atpCATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. (138 aa)
EDZ42301.1[S] COG3743 Uncharacterized conserved protein. (198 aa)
sdhC_1[C] COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit. (117 aa)
EDZ42262.1Cytochrome c oxidase,ba3-type, subunit I, putative. (81 aa)
EDZ42158.1Conserved hypothetical protein. (83 aa)
atpF_2ATP synthase F0, B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. (186 aa)
ctaDCytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (557 aa)
atpBATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family. (247 aa)
nuoANADH-quinone oxidoreductase chain a; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family. (132 aa)
EDZ41753.1[S] COG4391 Uncharacterized protein conserved in bacteria. (59 aa)
nuoKNADH-quinone oxidoreductase chain k; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family. (101 aa)
EDZ41653.1[C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2. (61 aa)
EDZ40597.1[C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1. (152 aa)
EDZ41585.1Peptidase M16; [O] COG1025 Secreted/periplasmic Zn-dependent peptidases, insulinase-like; Belongs to the peptidase M16 family. (452 aa)
atpAATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. (512 aa)
sdhASuccinate dehydrogenase, flavoprotein subunit; [H] COG0029 Aspartate oxidase; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (601 aa)
sdhC_2[C] COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit. (103 aa)
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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