STRINGSTRING
EDQ02373.1 EDQ02373.1 EDQ02759.1 EDQ02759.1 EDQ02760.1 EDQ02760.1 EDP99078.1 EDP99078.1 napD napD napA napA NapB NapB NapC NapC napF napF EDQ01281.1 EDQ01281.1 EDQ01282.1 EDQ01282.1 torD torD EDQ01288.1 EDQ01288.1 EDQ00524.1 EDQ00524.1 EDP99282.1 EDP99282.1 EDP99283.1 EDP99283.1 EDP99284.1 EDP99284.1 EDP99285.1 EDP99285.1 EDP99287.1 EDP99287.1 EDP99288.1 EDP99288.1 EDQ02054.1 EDQ02054.1 EDQ02055.1 EDQ02055.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
EDQ02373.1Tetraheme cytochrome c; COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit. (187 aa)
EDQ02759.1Formate-dependent nitrite reductase complex Fe-S centers; COG0437 Fe-S-cluster-containing hydrogenase components 1. (231 aa)
EDQ02760.1COG3301 Formate-dependent nitrite reductase, membrane component. (313 aa)
EDP99078.1Hypothetical protein; COG0437 Fe-S-cluster-containing hydrogenase components 1. (697 aa)
napDNapD protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export. (105 aa)
napAAnaerobic dehydrogenase, typically selenocysteine-containing; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite. (829 aa)
NapBPeriplasmic nitrate reductase, cytochrome c-type protein; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family. (151 aa)
NapCPeriplasmic nitrate reductase, cytochrome c-type protein; COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit. (196 aa)
napFFerredoxin-type protein NapF; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family. (161 aa)
EDQ01281.1Tetraheme cytochrome c; COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit; Belongs to the TorC/TorY family. (392 aa)
EDQ01282.1trimethylamine-N-oxide reductase; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (830 aa)
torDChaperone protein TorD; Involved in the biogenesis of TorA. Acts on TorA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; Belongs to the TorD/DmsD family. TorD subfamily. (226 aa)
EDQ01288.1Periplasmic protein TorT; COG1879 ABC-type sugar transport system, periplasmic component. (435 aa)
EDQ00524.1Iron-sulfur cluster-binding protein; COG0348 Polyferredoxin. (404 aa)
EDP99282.1Formate dehydrogenase, C subunit, putative; COG2864 Cytochrome b subunit of formate dehydrogenase. (321 aa)
EDP99283.1Hypothetical protein; COG3381 Uncharacterized component of anaerobic dehydrogenases. (195 aa)
EDP99284.1Putative anaerobic reductase component; COG0437 Fe-S-cluster-containing hydrogenase components 1. (181 aa)
EDP99285.1Putative molybdopterin oxidoreductase; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (714 aa)
EDP99287.1TtrB; COG0437 Fe-S-cluster-containing hydrogenase components 1. (231 aa)
EDP99288.1Hypothetical tetrathionate reductase; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1011 aa)
EDQ02054.1Cytochrome c-type protein NapB; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family. (141 aa)
EDQ02055.1napD protein; COG3062 Uncharacterized protein involved in formation of periplasmic nitrate reductase. (62 aa)
Your Current Organism:
Shewanella benthica
NCBI taxonomy Id: 314608
Other names: S. benthica KT99, Shewanella benthica KT99, Shewanella benthica str. KT99, Shewanella benthica strain KT99
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