STRINGSTRING
EDQ00616.1 EDQ00616.1 nuoK nuoK nuoC nuoC EDP99539.1 EDP99539.1 EDQ00405.1 EDQ00405.1 EDQ00404.1 EDQ00404.1 EDQ00403.1 EDQ00403.1 EDP99427.1 EDP99427.1 NuoM NuoM EDP99429.1 EDP99429.1 CydB CydB EDQ00739.1 EDQ00739.1 nuoN nuoN nqrE-2 nqrE-2 nqrB-2 nqrB-2 EDQ02129.1 EDQ02129.1 EDQ02603.1 EDQ02603.1 EDP99282.1 EDP99282.1 EDP99855.1 EDP99855.1 EDP99856.1 EDP99856.1 EDQ01360.1 EDQ01360.1 EDQ01364.1 EDQ01364.1 EDQ01374.1 EDQ01374.1 EDQ02392.1 EDQ02392.1 YceJ YceJ nqrB nqrB nqrE nqrE PetB PetB EDP99078.1 EDP99078.1 CydA CydA NuoL NuoL
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
EDQ00616.1B-type cytochrome, putative; COG3658 Cytochrome b. (204 aa)
nuoKNADH dehydrogenase kappa subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family. (100 aa)
nuoCNADH dehydrogenase I, C/D subunits; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family. (596 aa)
EDP99539.1Cytochrome b, putative; COG3658 Cytochrome b. (246 aa)
EDQ00405.1Quinone-reactive Ni/Fe hydrogenase, large subunit; COG0374 Ni,Fe-hydrogenase I large subunit. (410 aa)
EDQ00404.1Quinone-reactive Ni/Fe hydrogenase, large subunit; COG0374 Ni,Fe-hydrogenase I large subunit. (171 aa)
EDQ00403.1COG1969 Ni,Fe-hydrogenase I cytochrome b subunit. (221 aa)
EDP99427.1ATP synthase subunit E; COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit. (178 aa)
NuoMCOG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M). (532 aa)
EDP99429.1NADH dehydrogenase gamma subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (960 aa)
CydBCOG1294 Cytochrome bd-type quinol oxidase, subunit 2. (379 aa)
EDQ00739.1Hypothetical protein; COG4890 Predicted outer membrane lipoprotein. (38 aa)
nuoNNADH dehydrogenase subunit N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. (475 aa)
nqrE-2NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol; Belongs to the NqrDE/RnfAE family. (202 aa)
nqrB-2Na(+)-translocating NADH-quinone reductase subunit B; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. (399 aa)
EDQ02129.1Hypothetical protein. (178 aa)
EDQ02603.1COG3672 Predicted periplasmic protein. (235 aa)
EDP99282.1Formate dehydrogenase, C subunit, putative; COG2864 Cytochrome b subunit of formate dehydrogenase. (321 aa)
EDP99855.1Probable cytochrome-C oxidase subunit III oxidoreductase protein; COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3. (230 aa)
EDP99856.1COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3. (230 aa)
EDQ01360.1Formate dehydrogenase, C subunit, putative; COG2864 Cytochrome b subunit of formate dehydrogenase. (341 aa)
EDQ01364.1Formate dehydrogenase, C subunit, putative; COG2864 Cytochrome b subunit of formate dehydrogenase. (328 aa)
EDQ01374.1Electron transfer flavoprotein-ubiquinone oxidoreductase, putative; Accepts electrons from ETF and reduces ubiquinone. (549 aa)
EDQ02392.1COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3. (291 aa)
YceJCOG3038 Cytochrome B561. (182 aa)
nqrBNa(+)-translocating NADH-quinone reductase subunit B; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. (415 aa)
nqrENADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol; Belongs to the NqrDE/RnfAE family. (202 aa)
PetBUbiquinol-cytochrome c reductase, cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (404 aa)
EDP99078.1Hypothetical protein; COG0437 Fe-S-cluster-containing hydrogenase components 1. (697 aa)
CydACOG1271 Cytochrome bd-type quinol oxidase, subunit 1. (518 aa)
NuoLCOG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit. (629 aa)
Your Current Organism:
Shewanella benthica
NCBI taxonomy Id: 314608
Other names: S. benthica KT99, Shewanella benthica KT99, Shewanella benthica str. KT99, Shewanella benthica strain KT99
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