STRINGSTRING
EDQ00203.1 EDQ00203.1 EDQ00469.1 EDQ00469.1 Cyp Cyp EDP98918.1 EDP98918.1 EDQ01162.1 EDQ01162.1 surA surA EDQ02166.1 EDQ02166.1 PvdQ PvdQ EDQ02103.1 EDQ02103.1 EDQ02102.1 EDQ02102.1 EDQ02054.1 EDQ02054.1 PhoB-2 PhoB-2 EDQ00110.1 EDQ00110.1 EDQ00084.1 EDQ00084.1 EDQ02504.1 EDQ02504.1 EDP99288.1 EDP99288.1 EDP99285.1 EDP99285.1 EDQ00540.1 EDQ00540.1 EDP99160.1 EDP99160.1 EDQ01288.1 EDQ01288.1 EDQ01282.1 EDQ01282.1 EDQ01277.1 EDQ01277.1 EDQ01228.1 EDQ01228.1 EDQ01637.1 EDQ01637.1 EDQ01595.1 EDQ01595.1 EDQ01594.1 EDQ01594.1 EDQ00726.1 EDQ00726.1 EDQ00720.1 EDQ00720.1 flgI flgI FlgJ FlgJ EDQ01525.1 EDQ01525.1 EDQ01494.1 EDQ01494.1 EDP99373.1 EDP99373.1 EDP99773.1 EDP99773.1 tolB tolB cpoB cpoB Prc Prc EDP99683.1 EDP99683.1 speA speA EDP99237.1 EDP99237.1 lolA lolA EDQ02310.1 EDQ02310.1 EDQ02269.1 EDQ02269.1 EDQ02212.1 EDQ02212.1 YfgC YfgC EDP99251.1 EDP99251.1 msrP msrP EDP99039.1 EDP99039.1 EDQ00438.1 EDQ00438.1 EDQ00432.1 EDQ00432.1 EDQ00430.1 EDQ00430.1 NapB NapB napA napA EDQ00378.1 EDQ00378.1 EDQ00377.1 EDQ00377.1 EDP99211.1 EDP99211.1 EDP99190.1 EDP99190.1 EDP99076.1 EDP99076.1 EDP99829.1 EDP99829.1 EDP99827.1 EDP99827.1 EDQ01006.1 EDQ01006.1 EDQ00116.1 EDQ00116.1 Ggt Ggt EDP98964.1 EDP98964.1 EDP98957.1 EDP98957.1 DegQ DegQ DegS DegS EDQ01923.1 EDQ01923.1 lptA lptA EDQ01892.1 EDQ01892.1 EDQ01891.1 EDQ01891.1 PpiB-2 PpiB-2 EDQ00813.1 EDQ00813.1 EDQ00782.1 EDQ00782.1 EDQ00751.1 EDQ00751.1 EDQ00271.1 EDQ00271.1 EDQ00262.1 EDQ00262.1 EDP99633.1 EDP99633.1 DsbC DsbC EDQ02831.1 EDQ02831.1 EDQ02773.1 EDQ02773.1 EDQ02753.1 EDQ02753.1 EDQ02747.1 EDQ02747.1 EDQ02746.1 EDQ02746.1 EDQ02712.1 EDQ02712.1 EDQ02709.1 EDQ02709.1 EDQ02673.1 EDQ02673.1 PpiB PpiB Skp Skp EDQ00201.1 EDQ00201.1 Gpo Gpo EDQ01790.1 EDQ01790.1 EDQ01789.1 EDQ01789.1 YceI YceI NrfA NrfA EDQ01736.1 EDQ01736.1 EDQ00617.1 EDQ00617.1 EDP98881.1 EDP98881.1 Cc Cc EDQ02452.1 EDQ02452.1 EDQ02345.1 EDQ02345.1 EDQ02326.1 EDQ02326.1 EDQ01381.1 EDQ01381.1 EDQ01362.1 EDQ01362.1 EDQ01358.1 EDQ01358.1 EDQ01340.1 EDQ01340.1 EDQ01309.1 EDQ01309.1 EDP99858.1 EDP99858.1 YcfS YcfS EDP99725.1 EDP99725.1 nrfA nrfA DppA DppA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
EDQ00203.1Putative hydrolase; COG2366 Protein related to penicillin acylase. (443 aa)
EDQ00469.1Extracellular solute-binding protein, family 7; COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component. (62 aa)
CypPeptidyl-prolyl cis-trans isomerase A; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (189 aa)
EDP98918.1COG2951 Membrane-bound lytic murein transglycosylase B. (334 aa)
EDQ01162.1iron(III) ABC transporter, periplasmic iron(III)-binding protein; COG1840 ABC-type Fe3+ transport system, periplasmic component. (329 aa)
surASurvival protein surA; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation. (434 aa)
EDQ02166.1Aculeacin A acylase; COG2366 Protein related to penicillin acylase. (389 aa)
PvdQAculeacin A acylase; COG2366 Protein related to penicillin acylase. (425 aa)
EDQ02103.1Putative zinc proteinase; COG0612 Predicted Zn-dependent peptidases. (230 aa)
EDQ02102.1Hypothetical protein; COG0612 Predicted Zn-dependent peptidases. (219 aa)
EDQ02054.1Cytochrome c-type protein NapB; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family. (141 aa)
PhoB-2COG1785 Alkaline phosphatase; Belongs to the alkaline phosphatase family. (449 aa)
EDQ00110.1Hypothetical protein. (54 aa)
EDQ00084.1COG3770 Murein endopeptidase. (94 aa)
EDQ02504.1Thiol:disulfide interchange protein DsbA; COG0526 Thiol-disulfide isomerase and thioredoxins. (203 aa)
EDP99288.1Hypothetical tetrathionate reductase; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1011 aa)
EDP99285.1Putative molybdopterin oxidoreductase; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (714 aa)
EDQ00540.1Hypothetical protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). (269 aa)
EDP99160.1Thiol:disulfide interchange protein DsbE; COG0526 Thiol-disulfide isomerase and thioredoxins. (185 aa)
EDQ01288.1Periplasmic protein TorT; COG1879 ABC-type sugar transport system, periplasmic component. (435 aa)
EDQ01282.1trimethylamine-N-oxide reductase; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (830 aa)
EDQ01277.1Hypothetical protein. (176 aa)
EDQ01228.1Peptidase, M16 family protein; COG0612 Predicted Zn-dependent peptidases. (944 aa)
EDQ01637.1ABC transporter, periplasmic substrate-binding protein, putative; COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component. (275 aa)
EDQ01595.1Putative ABC transporter substrate-binding protein; COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components. (100 aa)
EDQ01594.1Hydroxymethylpyrimidine-binding protein; COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components. (193 aa)
EDQ00726.1Hypothetical protein. (386 aa)
EDQ00720.1Flagellar basal body P-ring biosynthesis protein; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family. (234 aa)
flgIFlagellar P-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (363 aa)
FlgJFlagellar protein FlgJ; COG3951 Rod binding protein. (335 aa)
EDQ01525.11,4-beta-D-glucan glucohydrolase D; COG1472 Beta-glucosidase-related glycosidases. (133 aa)
EDQ01494.1COG1524 Uncharacterized proteins of the AP superfamily. (380 aa)
EDP99373.1Thiol:disulfide interchange protein, DsbA family; COG0526 Thiol-disulfide isomerase and thioredoxins. (153 aa)
EDP99773.1COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain. (241 aa)
tolBtolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (442 aa)
cpoBHypothetical protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family. (231 aa)
PrcCOG0793 Periplasmic protease; Belongs to the peptidase S41A family. (694 aa)
EDP99683.1Hypothetical protein. (454 aa)
speAArginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. (637 aa)
EDP99237.1Hypothetical protein; Belongs to the UPF0312 family. (191 aa)
lolAOuter membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). (208 aa)
EDQ02310.1Sugar-binding protein, putative; COG1879 ABC-type sugar transport system, periplasmic component. (335 aa)
EDQ02269.1Hypothetical protein. (63 aa)
EDQ02212.1Penicillin-binding protein 4; COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4). (486 aa)
YfgCHypothetical protein; Functions as both a chaperone and a metalloprotease. Maintains the integrity of the outer membrane by promoting either the assembly or the elimination of outer membrane proteins, depending on their folding state. (486 aa)
EDP99251.1Hypothetical protein; COG4319 Ketosteroid isomerase homolog. (209 aa)
msrPHypothetical protein; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S- [...] (340 aa)
EDP99039.1COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains). (216 aa)
EDQ00438.1COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains). (385 aa)
EDQ00432.1Putative copper resistance (CopC-like) protein; COG2372 Uncharacterized protein, homolog of Cu resistance protein CopC. (132 aa)
EDQ00430.1Copper-resistance protein CopA; COG2132 Putative multicopper oxidases. (653 aa)
NapBPeriplasmic nitrate reductase, cytochrome c-type protein; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family. (151 aa)
napAAnaerobic dehydrogenase, typically selenocysteine-containing; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite. (829 aa)
EDQ00378.1COG2951 Membrane-bound lytic murein transglycosylase B. (92 aa)
EDQ00377.1COG2951 Membrane-bound lytic murein transglycosylase B. (75 aa)
EDP99211.1Curli production assembly/transport component CsgG precursor; COG1462 Uncharacterized protein involved in formation of curli polymers. (282 aa)
EDP99190.1Cytochrome c3; COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain. (117 aa)
EDP99076.1Ecotin precursor; COG4574 Serine protease inhibitor ecotin. (226 aa)
EDP99829.1COG1651 Protein-disulfide isomerase. (261 aa)
EDP99827.1Hypothetical protein; COG2931 RTX toxins and related Ca2+-binding proteins. (1027 aa)
EDQ01006.1Peptidase, M16 family protein; COG1025 Secreted/periplasmic Zn-dependent peptidases, insulinase-like; Belongs to the peptidase M16 family. (925 aa)
EDQ00116.1TonB2 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (206 aa)
GgtGamma-glutamyltranspeptidase; COG0405 Gamma-glutamyltransferase. (582 aa)
EDP98964.1Hypothetical ABC transporter protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain. (243 aa)
EDP98957.1COG2951 Membrane-bound lytic murein transglycosylase B. (377 aa)
DegQSerine protease, HtrA/DegQ/DegS family protein; COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family. (450 aa)
DegSProtease DegS; COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain. (360 aa)
EDQ01923.1Hypothetical protein; COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component. (220 aa)
lptAHypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm. (218 aa)
EDQ01892.1Hypothetical protein. (34 aa)
EDQ01891.1Metallo-beta-lactamase family protein; COG2015 Alkyl sulfatase and related hydrolases. (86 aa)
PpiB-2Putative peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (164 aa)
EDQ00813.1Hypothetical protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain. (89 aa)
EDQ00782.1Adhesion protein, putative; COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin. (304 aa)
EDQ00751.1HlyD family secretion protein; COG0845 Membrane-fusion protein. (323 aa)
EDQ00271.1Iron (III) ABC transporter, periplasmic-binding protein; COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component. (307 aa)
EDQ00262.1COG0810 Periplasmic protein TonB, links inner and outer membranes. (213 aa)
EDP99633.1Lipoprotein, putative; COG2823 Predicted periplasmic or secreted lipoprotein. (182 aa)
DsbCThiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. (245 aa)
EDQ02831.1ABC transporter, periplasmic substrate-binding protein, putative; COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component. (254 aa)
EDQ02773.1COG1651 Protein-disulfide isomerase. (40 aa)
EDQ02753.1Azurin precursor; Transfers electrons from cytochrome c551 to cytochrome oxidase. (161 aa)
EDQ02747.1Sodium:dicarboxylate symporter family/bacterial extracellular solute-binding family 3 protein; COG1301 Na+/H+-dicarboxylate symporters; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (174 aa)
EDQ02746.1Sodium:dicarboxylate symporter family/bacterial extracellular solute-binding family 3 protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain. (58 aa)
EDQ02712.1TonB1 protein; COG0810 Periplasmic protein TonB, links inner and outer membranes. (254 aa)
EDQ02709.1COG4558 ABC-type hemin transport system, periplasmic component. (316 aa)
EDQ02673.1COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (596 aa)
PpiBPeptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (164 aa)
SkpCOG2825 Outer membrane protein; Belongs to the skp family. (167 aa)
EDQ00201.1Putative hydrolase; COG2366 Protein related to penicillin acylase. (336 aa)
GpoCOG0386 Glutathione peroxidase; Belongs to the glutathione peroxidase family. (160 aa)
EDQ01790.1COG1785 Alkaline phosphatase; Belongs to the alkaline phosphatase family. (498 aa)
EDQ01789.1COG1785 Alkaline phosphatase; Belongs to the alkaline phosphatase family. (537 aa)
YceIHypothetical protein; Belongs to the UPF0312 family. (196 aa)
NrfACOG3303 Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit; Belongs to the cytochrome c-552 family. (441 aa)
EDQ01736.1COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain. (259 aa)
EDQ00617.1COG3909 Cytochrome c556. (153 aa)
EDP98881.1sigma-E factor regulatory protein RseB; COG3026 Negative regulator of sigma E activity. (310 aa)
CcCOG2863 Cytochrome c553. (206 aa)
EDQ02452.1Hypothetical protein; COG2998 ABC-type tungstate transport system, permease component. (270 aa)
EDQ02345.1COG0612 Predicted Zn-dependent peptidases. (406 aa)
EDQ02326.1Spheroplast protein y precursor, putative; COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein. (99 aa)
EDQ01381.1Molybdenum ABC transporter, periplasmic molybdenum-binding protein; COG0725 ABC-type molybdate transport system, periplasmic component. (287 aa)
EDQ01362.1Formate dehydrogenase, alpha subunit; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (951 aa)
EDQ01358.1Formate dehydrogenase, alpha subunit; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (949 aa)
EDQ01340.1Hypothetical protein. (144 aa)
EDQ01309.1Carboxyl-terminal protease, putative; COG0793 Periplasmic protease; Belongs to the peptidase S41A family. (406 aa)
EDP99858.1COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2. (495 aa)
YcfSCOG1376 Uncharacterized protein conserved in bacteria. (320 aa)
EDP99725.1Polyamine ABC transporter, periplasmic polyamine-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family. (366 aa)
nrfACytochrome c552 nitrite reductase; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family. (452 aa)
DppACOG0747 ABC-type dipeptide transport system, periplasmic component. (491 aa)
Your Current Organism:
Shewanella benthica
NCBI taxonomy Id: 314608
Other names: S. benthica KT99, Shewanella benthica KT99, Shewanella benthica str. KT99, Shewanella benthica strain KT99
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