STRINGSTRING
sbcD sbcD ABS23054.1 ABS23054.1 ABS23032.1 ABS23032.1 ABS22927.1 ABS22927.1 ABS22587.1 ABS22587.1 ABS22013.1 ABS22013.1 ABS21487.1 ABS21487.1 prpE prpE ABS21132.1 ABS21132.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sbcDNuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (385 aa)
ABS23054.1TIGRFAM: LPXTG-motif cell wall anchor domain; PFAM: surface protein from Gram-positive cocci anchor region; metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: bcz:BCZK3878 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase bifunctional periplasmic precursor protein; Belongs to the 5'-nucleotidase family. (745 aa)
ABS23032.1PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: bca:BCE_4169 5'-nucleotidase family protein; Belongs to the 5'-nucleotidase family. (530 aa)
ABS22927.1PFAM: metallophosphoesterase; KEGG: bca:BCE_4041 Ser/Thr protein phosphatase family protein. (287 aa)
ABS22587.1PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: btk:BT9727_3442 2',3'-cyclic-nucleotide 2'-phosphodiesterase; Belongs to the 5'-nucleotidase family. (527 aa)
ABS22013.1PFAM: metallophosphoesterase; KEGG: bcz:pE33L466_0391 possible DNA repair exonuclease. (282 aa)
ABS21487.1PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: bca:BCE_4169 5'-nucleotidase family protein; Belongs to the 5'-nucleotidase family. (509 aa)
prpEBis(5'nucleosyl)-tetraphosphatase, ApaH; Asymmetrically hydrolyzes Ap4p to yield AMP and ATP. (246 aa)
ABS21132.1PFAM: metallophosphoesterase; KEGG: btl:BALH_0903 DNA repair exonuclease. (413 aa)
Your Current Organism:
Bacillus cytotoxicus
NCBI taxonomy Id: 315749
Other names: B. cytotoxicus NVH 391-98, Bacillus cereus NVH 391-98, Bacillus cereus subsp. cytotoxicus NVH 391-98, Bacillus cereus subsp. cytotoxis NVH 391-98, Bacillus cytotoxicus NVH 391-98, Bacillus cytotoxicus str. NVH 391-98, Bacillus cytotoxicus strain NVH 391-98, Bacillus cytotoxis NVH 391-98
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