(18 nodes) Mixed, incl. MacB, ATP-binding domain, and FtsX-like permease family network (Bacillus pumilus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BPUM_0334	Hypothetical protein. (128 aa)
	BPUM_0335	Hypothetical protein. (285 aa)
	BPUM_0336	Hypothetical protein. (428 aa)
	BPUM_0337	Peptide ABC transporter ATP-binding protein. (224 aa)
	BPUM_1330	Antimicrobial peptide abc transporter permease. (208 aa)
	BPUM_1331	Efflux permease; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (368 aa)
	BPUM_1332	Macrolide ABC transporter ATP-binding protein. (233 aa)
	BPUM_1333	Macrolide ABC transporter permease. (397 aa)
	BPUM_3563	Hypothetical protein. (371 aa)
	BPUM_3564	ABC transporter ATP-binding protein. (217 aa)
	BPUM_3629	Alkylphosphonate utilization protein. (112 aa)
	BPUM_3630	Glycerate kinase; Belongs to the glycerate kinase type-1 family. (379 aa)
	BPUM_3631	Gluconate:proton symporter. (423 aa)
	BPUM_3632	Sugar diacid utilization regulator. (370 aa)
	BPUM_3633	TetR family transcriptional regulator. (216 aa)
	BPUM_3634	ABC transporter permease. (417 aa)
	BPUM_3635	ABC transporter ATP-binding protein. (775 aa)
	BPUM_3636	ABC transporter ATP-binding protein. (253 aa)

Your Current Organism:

Bacillus pumilus

NCBI taxonomy Id: 315750
Other names: B. pumilus SAFR-032, Bacillus pumilus SAFR-032, Bacillus pumilus str. SAFR-032, Bacillus pumilus strain SAFR-032

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
BPUM_0334	BPUM_0335	Hypothetical protein.	Hypothetical protein.	0.472
BPUM_0334	BPUM_0336	Hypothetical protein.	Hypothetical protein.	0.477
BPUM_0334	BPUM_0337	Hypothetical protein.	Peptide ABC transporter ATP-binding protein.	0.472
BPUM_0335	BPUM_0334	Hypothetical protein.	Hypothetical protein.	0.472
BPUM_0335	BPUM_0336	Hypothetical protein.	Hypothetical protein.	0.878
BPUM_0335	BPUM_0337	Hypothetical protein.	Peptide ABC transporter ATP-binding protein.	0.931
BPUM_0335	BPUM_1332	Hypothetical protein.	Macrolide ABC transporter ATP-binding protein.	0.710
BPUM_0335	BPUM_3564	Hypothetical protein.	ABC transporter ATP-binding protein.	0.710
BPUM_0335	BPUM_3636	Hypothetical protein.	ABC transporter ATP-binding protein.	0.710
BPUM_0336	BPUM_0334	Hypothetical protein.	Hypothetical protein.	0.477
BPUM_0336	BPUM_0335	Hypothetical protein.	Hypothetical protein.	0.878
BPUM_0336	BPUM_0337	Hypothetical protein.	Peptide ABC transporter ATP-binding protein.	0.930
BPUM_0336	BPUM_1331	Hypothetical protein.	Efflux permease; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.879
BPUM_0336	BPUM_1332	Hypothetical protein.	Macrolide ABC transporter ATP-binding protein.	0.704
BPUM_0336	BPUM_3564	Hypothetical protein.	ABC transporter ATP-binding protein.	0.707
BPUM_0336	BPUM_3636	Hypothetical protein.	ABC transporter ATP-binding protein.	0.704
BPUM_0337	BPUM_0334	Peptide ABC transporter ATP-binding protein.	Hypothetical protein.	0.472
BPUM_0337	BPUM_0335	Peptide ABC transporter ATP-binding protein.	Hypothetical protein.	0.931
BPUM_0337	BPUM_0336	Peptide ABC transporter ATP-binding protein.	Hypothetical protein.	0.930
BPUM_0337	BPUM_1331	Peptide ABC transporter ATP-binding protein.	Efflux permease; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.703