STRINGSTRING
BPUM_2076 BPUM_2076 BPUM_3710 BPUM_3710 BPUM_3514 BPUM_3514 BPUM_3063 BPUM_3063 BPUM_2772 BPUM_2772 BPUM_2309 BPUM_2309 sigA sigA BPUM_2042 BPUM_2042 BPUM_1546 BPUM_1546 BPUM_1427 BPUM_1427 BPUM_1426 BPUM_1426 sigI sigI BPUM_0907 BPUM_0907 BPUM_0902 BPUM_0902 BPUM_0807 BPUM_0807 BPUM_0780 BPUM_0780 BPUM_0589 BPUM_0589 BPUM_0588 BPUM_0588 BPUM_0446 BPUM_0446 BPUM_0160 BPUM_0160 BPUM_0083 BPUM_0083
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BPUM_2076RNA polymerase sigma-F factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (255 aa)
BPUM_3710RNA polymerase subunit sigma-70; Belongs to the sigma-70 factor family. ECF subfamily. (164 aa)
BPUM_3514RNA polymerase subunit sigma; Belongs to the sigma-70 factor family. ECF subfamily. (176 aa)
BPUM_3063RNA polymerase sigma-54 factor. (434 aa)
BPUM_2772Fis family transcriptional regulator; Positive regulatory protein that acts at the late promoter PL. (172 aa)
BPUM_2309RNA polymerase subunit sigma-70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (247 aa)
sigARNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (373 aa)
BPUM_2042RNA polymerase subunit sigma; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in B. subtilis has been shown to regulate cell envelope modification and may effect antibiotic resistance; Belongs to the sigma-70 factor family. ECF subfamily. (202 aa)
BPUM_1546RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (255 aa)
BPUM_1427RNA polymerase sigma-G factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (259 aa)
BPUM_1426Sporulation sigma factor SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (239 aa)
sigIRNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; Belongs to the sigma-70 factor family. SigI subfamily. (251 aa)
BPUM_0907Transcriptional regulator. (130 aa)
BPUM_0902RNA polymerase subunit sigma; Belongs to the sigma-70 factor family. ECF subfamily. (163 aa)
BPUM_0807RNA polymerase subunit sigma-70. (200 aa)
BPUM_0780RNA polymerase subunit sigma-70; Belongs to the sigma-70 factor family. ECF subfamily. (188 aa)
BPUM_0589Hypothetical protein. (482 aa)
BPUM_0588RNA polymerase; Belongs to the sigma-70 factor family. ECF subfamily. (181 aa)
BPUM_0446RNA polymerase sigma-B factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma B is not essential for sporulation; rather it is required for maximal expression of ctc and csbA which are transcribed in the early stationary phase under conditions inimical to sporulation; induced by heat shock, salt stress, oxidative stress, glucose limitation, oxygen limitation and entry into stationary phase. (262 aa)
BPUM_0160RNA polymerase subunit sigma; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription: this protein is involved in detoxification and protection against antimicrobial; Belongs to the sigma-70 factor family. ECF subfamily. (187 aa)
BPUM_0083DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; Belongs to the sigma-70 factor family. (218 aa)
Your Current Organism:
Bacillus pumilus
NCBI taxonomy Id: 315750
Other names: B. pumilus SAFR-032, Bacillus pumilus SAFR-032, Bacillus pumilus str. SAFR-032, Bacillus pumilus strain SAFR-032
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