STRINGSTRING
BPUM_3710 BPUM_3710 BPUM_3514 BPUM_3514 BPUM_0780 BPUM_0780 BPUM_2042 BPUM_2042 BPUM_0902 BPUM_0902 BPUM_2772 BPUM_2772 BPUM_0588 BPUM_0588 BPUM_0160 BPUM_0160
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BPUM_3710RNA polymerase subunit sigma-70; Belongs to the sigma-70 factor family. ECF subfamily. (164 aa)
BPUM_3514RNA polymerase subunit sigma; Belongs to the sigma-70 factor family. ECF subfamily. (176 aa)
BPUM_0780RNA polymerase subunit sigma-70; Belongs to the sigma-70 factor family. ECF subfamily. (188 aa)
BPUM_2042RNA polymerase subunit sigma; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in B. subtilis has been shown to regulate cell envelope modification and may effect antibiotic resistance; Belongs to the sigma-70 factor family. ECF subfamily. (202 aa)
BPUM_0902RNA polymerase subunit sigma; Belongs to the sigma-70 factor family. ECF subfamily. (163 aa)
BPUM_2772Fis family transcriptional regulator; Positive regulatory protein that acts at the late promoter PL. (172 aa)
BPUM_0588RNA polymerase; Belongs to the sigma-70 factor family. ECF subfamily. (181 aa)
BPUM_0160RNA polymerase subunit sigma; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription: this protein is involved in detoxification and protection against antimicrobial; Belongs to the sigma-70 factor family. ECF subfamily. (187 aa)
Your Current Organism:
Bacillus pumilus
NCBI taxonomy Id: 315750
Other names: B. pumilus SAFR-032, Bacillus pumilus SAFR-032, Bacillus pumilus str. SAFR-032, Bacillus pumilus strain SAFR-032
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