STRINGSTRING
RPE_2380 RPE_2380 RPE_2910 RPE_2910 RPE_2911 RPE_2911 RPE_2912 RPE_2912 RPE_4310 RPE_4310
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPE_2380Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: rpc:RPC_3097 propionyl-CoA carboxylase. (518 aa)
RPE_2910hydroxymethylglutaryl-CoA lyase; PFAM: pyruvate carboxyltransferase; KEGG: rpc:RPC_2780 pyruvate carboxyltransferase. (301 aa)
RPE_2911Carbamoyl-phosphate synthase L chain, ATP-binding protein; PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rpc:RPC_2781 carbamoyl-phosphate synthase L chain, ATP-binding. (669 aa)
RPE_2912Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: rpc:RPC_2782 propionyl-CoA carboxylase. (534 aa)
RPE_4310PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpd:RPD_3693 isovaleryl-CoA dehydrogenase. (390 aa)
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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