STRINGSTRING
RPE_0915 RPE_0915 RPE_1979 RPE_1979 RPE_2381 RPE_2381 RPE_2382 RPE_2382 RPE_2383 RPE_2383 RPE_2384 RPE_2384 RPE_2385 RPE_2385 RPE_2386 RPE_2386 RPE_2387 RPE_2387 RPE_2388 RPE_2388 RPE_3439 RPE_3439 RPE_3541 RPE_3541 RPE_4399 RPE_4399 RPE_4455 RPE_4455
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPE_0915PFAM: aminotransferase class-III; KEGG: rpc:RPC_0894 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (447 aa)
RPE_19793-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rpa:RPA1973 3-hydroxyisobutyrate dehydrogenase. (289 aa)
RPE_2381PFAM: regulatory protein, TetR; KEGG: rpc:RPC_3096 transcriptional regulator, TetR family. (227 aa)
RPE_2382TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: rpc:RPC_3095 methylmalonate-semialdehyde dehydrogenase. (498 aa)
RPE_2383KEGG: rpb:RPB_2118 hypothetical protein. (75 aa)
RPE_2384KEGG: rpb:RPB_2119 PilT protein-like. (123 aa)
RPE_2385PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpb:RPB_2120 acyl-CoA dehydrogenase-like. (382 aa)
RPE_2386PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpa:RPA3447 enoyl-CoA hydratase. (361 aa)
RPE_2387TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rpa:RPA3446 3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family. (295 aa)
RPE_2388PFAM: AMP-dependent synthetase and ligase; KEGG: rpa:RPA3445 probable acetyl-CoA synthetase. (574 aa)
RPE_3439Carbamoyl-phosphate synthase L chain, ATP-binding protein; PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: rpc:RPC_3352 carbamoyl-phosphate synthase L chain, ATP-binding. (670 aa)
RPE_3541PFAM: carboxyl transferase; KEGG: rpc:RPC_3397 carboxyl transferase. (510 aa)
RPE_4399PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpd:RPD_1230 alcohol dehydrogenase, zinc-binding. (326 aa)
RPE_4455PFAM: AMP-dependent synthetase and ligase; KEGG: rpc:RPC_4396 AMP-dependent synthetase and ligase. (636 aa)
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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