STRINGSTRING
RPE_0240 RPE_0240 RPE_4306 RPE_4306 RPE_4307 RPE_4307 RPE_4308 RPE_4308 RPE_4318 RPE_4318
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPE_0240PFAM: MmgE/PrpD family protein; KEGG: rpd:RPD_0146 MmgE/PrpD. (455 aa)
RPE_4306KEGG: rpa:RPA1610 hypothetical protein. (285 aa)
RPE_4307PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rpc:RPC_4266 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family. (370 aa)
RPE_4308PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpa:RPA1612 putative acyl-CoA dehydrogenase. (390 aa)
RPE_4318PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rpb:RPB_3947 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family. (402 aa)
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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