STRINGSTRING
RPE_0128 RPE_0128 RPE_0139 RPE_0139 RPE_0234 RPE_0234 RPE_0389 RPE_0389 RPE_0434 RPE_0434 RPE_0452 RPE_0452 RPE_0698 RPE_0698 RPE_0715 RPE_0715 RPE_0724 RPE_0724 RPE_0834 RPE_0834 RPE_0882 RPE_0882 RPE_0923 RPE_0923 RPE_1397 RPE_1397 RPE_1399 RPE_1399 RPE_1408 RPE_1408 RPE_1416 RPE_1416 RPE_1431 RPE_1431 RPE_1474 RPE_1474 RPE_1550 RPE_1550 RPE_1871 RPE_1871 RPE_1873 RPE_1873 RPE_1878 RPE_1878 RPE_1879 RPE_1879 RPE_1988 RPE_1988 RPE_1996 RPE_1996 RPE_2141 RPE_2141 RPE_2180 RPE_2180 RPE_2205 RPE_2205 RPE_2264 RPE_2264 RPE_2319 RPE_2319 RPE_2325 RPE_2325 RPE_2333 RPE_2333 RPE_2405 RPE_2405 RPE_2600 RPE_2600 RPE_2621 RPE_2621 RPE_2632 RPE_2632 RPE_2775 RPE_2775 RPE_2794 RPE_2794 RPE_2848 RPE_2848 RPE_2889 RPE_2889 RPE_2895 RPE_2895 RPE_2916 RPE_2916 RPE_2973 RPE_2973 RPE_2998 RPE_2998 RPE_3314 RPE_3314 RPE_3396 RPE_3396 RPE_3397 RPE_3397 RPE_4061 RPE_4061 RPE_4062 RPE_4062 RPE_4079 RPE_4079 RPE_4109 RPE_4109 RPE_4140 RPE_4140 RPE_4174 RPE_4174 RPE_4175 RPE_4175 RPE_4268 RPE_4268 RPE_4288 RPE_4288 RPE_4289 RPE_4289 RPE_4354 RPE_4354 RPE_4386 RPE_4386 RPE_4387 RPE_4387 RPE_4593 RPE_4593 RPE_4750 RPE_4750 RPE_4762 RPE_4762 RPE_4782 RPE_4782 RPE_4823 RPE_4823 RPE_4919 RPE_4919
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPE_0128KEGG: rpc:RPC_0544 hypothetical protein. (303 aa)
RPE_0139PFAM: protein of unknown function DUF949; KEGG: rpc:RPC_0527 protein of unknown function DUF949. (481 aa)
RPE_0234PFAM: protein of unknown function DUF1236; KEGG: rpc:RPC_0372 hypothetical protein. (138 aa)
RPE_0389KEGG: rpc:RPC_0285 hypothetical protein. (183 aa)
RPE_0434PFAM: protein of unknown function DUF1150; KEGG: rpc:RPC_0410 protein of unknown function DUF1150. (87 aa)
RPE_0452KEGG: rpc:RPC_0394 hypothetical protein. (133 aa)
RPE_0698KEGG: rpc:RPC_0771 hypothetical protein. (550 aa)
RPE_0715PFAM: Sel1 domain protein repeat-containing protein; KEGG: rpc:RPC_0738 Sel1. (1095 aa)
RPE_0724KEGG: rpc:RPC_0752 hypothetical protein. (99 aa)
RPE_0834Porin; PFAM: porin; KEGG: rpa:RPA2815 possible outer membrane protein. (275 aa)
RPE_0882KEGG: rpc:RPC_4703 hypothetical protein. (73 aa)
RPE_0923KEGG: rpc:RPC_0900 putative outer-membrane immunogenic protein precursor. (207 aa)
RPE_1397KEGG: nha:Nham_1099 hypothetical protein. (181 aa)
RPE_1399PFAM: NUDIX hydrolase; KEGG: rpb:RPB_4195 NUDIX hydrolase. (164 aa)
RPE_1408KEGG: rpc:RPC_1401 hypothetical protein. (154 aa)
RPE_1416KEGG: rpc:RPC_1393 hypothetical protein. (245 aa)
RPE_1431KEGG: rpc:RPC_1410 hypothetical protein. (205 aa)
RPE_1474KEGG: rpc:RPC_1455 hypothetical protein. (2117 aa)
RPE_1550KEGG: rpc:RPC_1516 hypothetical protein. (371 aa)
RPE_1871KEGG: rpc:RPC_1778 hypothetical protein. (144 aa)
RPE_1873PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rpc:RPC_1780 peptidoglycan-binding domain 1. (222 aa)
RPE_1878KEGG: rpc:RPC_1785 hypothetical protein. (187 aa)
RPE_1879PFAM: protein of unknown function DUF1214; KEGG: rpc:RPC_1786 protein of unknown function DUF1214. (192 aa)
RPE_1988KEGG: rpc:RPC_2077 hypothetical protein. (173 aa)
RPE_1996KEGG: rpc:RPC_2084 hypothetical protein. (380 aa)
RPE_2141PFAM: AsmA family protein; KEGG: rpc:RPC_3274 AsmA. (1188 aa)
RPE_2180KEGG: rpc:RPC_3260 hypothetical protein. (66 aa)
RPE_2205KEGG: bja:bll6480 hypothetical protein. (232 aa)
RPE_2264KEGG: rpc:RPC_3188 hypothetical protein. (384 aa)
RPE_2319Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane. (492 aa)
RPE_2325PFAM: transglutaminase family protein cysteine peptidase, BTLCP; KEGG: rpc:RPC_3134 transglutaminase-like cysteine peptidase, BTLCP. (207 aa)
RPE_2333KEGG: rpc:RPC_3126 hypothetical protein. (357 aa)
RPE_2405PFAM: GCN5-related N-acetyltransferase; KEGG: rpc:RPC_2354 GCN5-related N-acetyltransferase. (204 aa)
RPE_2600KEGG: rpc:RPC_2476 hypothetical protein. (291 aa)
RPE_2621PFAM: Sel1 domain protein repeat-containing protein; KEGG: rpc:RPC_2495 Sel1-like. (262 aa)
RPE_2632Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane. (497 aa)
RPE_2775KEGG: rpc:RPC_2595 hypothetical protein. (79 aa)
RPE_2794PFAM: Invasion associated locus B family protein; KEGG: rpc:RPC_2614 invasion associated locus B. (258 aa)
RPE_2848KEGG: rpc:RPC_2686 hypothetical protein. (69 aa)
RPE_2889KEGG: rpd:RPD_2756 putative outer membrane protein. (247 aa)
RPE_2895KEGG: rpc:RPC_2763 putative outer-membrane protein precursor. (250 aa)
RPE_2916KEGG: rpc:RPC_2788 hypothetical protein. (578 aa)
RPE_2973KEGG: rpc:RPC_2847 hypothetical protein. (1247 aa)
RPE_2998KEGG: bja:blr4700 putative outer-membrane immunogenic protein precursor. (219 aa)
RPE_3314KEGG: rpc:RPC_2294 hypothetical protein. (329 aa)
RPE_3396PFAM: branched-chain amino acid transport; KEGG: rpc:RPC_3318 hypothetical protein. (114 aa)
RPE_3397PFAM: AzlC family protein; KEGG: rpc:RPC_3319 AzlC-like. (245 aa)
RPE_4061Phasin; TIGRFAM: phasin family protein; phasin; KEGG: rpc:RPC_3940 phasin 2. (145 aa)
RPE_4062Phasin; TIGRFAM: phasin; KEGG: rpc:RPC_3941 phasin 2. (127 aa)
RPE_4079PFAM: AsmA family protein; KEGG: rpc:RPC_3951 AsmA. (645 aa)
RPE_4109PFAM: protein of unknown function DUF1036; KEGG: rpc:RPC_3981 protein of unknown function DUF1036. (196 aa)
RPE_4140KEGG: rpc:RPC_4085 hypothetical protein. (515 aa)
RPE_4174PFAM: protein of unknown function DUF992; KEGG: rpc:RPC_4120 protein of unknown function DUF992. (157 aa)
RPE_4175PFAM: protein of unknown function DUF992; KEGG: rpc:RPC_4121 protein of unknown function DUF992. (171 aa)
RPE_4268TIGRFAM: flagellar export protein FliJ; KEGG: rpc:RPC_4231 flagellar export FliJ. (139 aa)
RPE_4288PFAM: Uncharacterised conserved protein UCP033924; KEGG: rpc:RPC_4251 uncharacterised conserved protein UCP033924. (199 aa)
RPE_4289KEGG: rpc:RPC_4252 hypothetical protein. (401 aa)
RPE_4354KEGG: rpc:RPC_4295 hypothetical protein. (281 aa)
RPE_4386TIGRFAM: conserved hypothetical protein; KEGG: rpc:RPC_4328 hypothetical protein. (125 aa)
RPE_4387KEGG: rpc:RPC_4329 hypothetical protein. (87 aa)
RPE_4593KEGG: rpc:RPC_1137 hypothetical protein. (168 aa)
RPE_4750PFAM: Invasion associated locus B family protein; KEGG: rpd:RPD_0813 invasion associated locus B. (190 aa)
RPE_4762KEGG: rpc:RPC_4798 hypothetical protein. (218 aa)
RPE_4782KEGG: rpc:RPC_4819 hypothetical protein. (199 aa)
RPE_4823KEGG: rpc:RPC_4859 hypothetical protein. (262 aa)
RPE_4919KEGG: rpc:RPC_4942 hypothetical protein. (105 aa)
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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