STRINGSTRING
ku ku RPE_0433 RPE_0433 RPE_0513 RPE_0513 RPE_0515 RPE_0515 RPE_0516 RPE_0516 RPE_0668 RPE_0668 RPE_0725 RPE_0725 RPE_0726 RPE_0726 RPE_0727 RPE_0727 RPE_0730 RPE_0730 RPE_0731 RPE_0731 RPE_0976 RPE_0976 RPE_0977 RPE_0977 RPE_1188 RPE_1188 RPE_1189 RPE_1189 RPE_1190 RPE_1190 RPE_1278 RPE_1278 RPE_1322 RPE_1322 RPE_1369 RPE_1369 RPE_1385 RPE_1385 RPE_1491 RPE_1491 RPE_1605 RPE_1605 RPE_1728 RPE_1728 RPE_1820 RPE_1820 RPE_1821 RPE_1821 RPE_1822 RPE_1822 RPE_1824 RPE_1824 RPE_1825 RPE_1825 RPE_1826 RPE_1826 dnaE2 dnaE2 RPE_2054 RPE_2054 RPE_2055 RPE_2055 RPE_2074 RPE_2074 RPE_2081 RPE_2081 RPE_2082 RPE_2082 RPE_2138 RPE_2138 RPE_2270 RPE_2270 RPE_2802 RPE_2802 RPE_2861 RPE_2861 RPE_2899 RPE_2899 RPE_3012 RPE_3012 RPE_3013 RPE_3013 RPE_3016 RPE_3016 RPE_3035 RPE_3035 RPE_3049 RPE_3049 RPE_3091 RPE_3091 RPE_3150 RPE_3150 RPE_3158 RPE_3158 RPE_3159 RPE_3159 RPE_3160 RPE_3160 RPE_3266 RPE_3266 RPE_3267 RPE_3267 RPE_3269 RPE_3269 RPE_3418 RPE_3418 RPE_3420 RPE_3420 RPE_3639 RPE_3639 RPE_3640 RPE_3640 RPE_3641 RPE_3641 RPE_3645 RPE_3645 RPE_3648 RPE_3648 RPE_3649 RPE_3649 RPE_3664 RPE_3664 RPE_3665 RPE_3665 RPE_3714 RPE_3714 RPE_3724 RPE_3724 ku-2 ku-2 RPE_3864 RPE_3864 RPE_3867 RPE_3867 RPE_3903 RPE_3903 RPE_3931 RPE_3931 RPE_3956 RPE_3956 RPE_3957 RPE_3957 RPE_4112 RPE_4112 RPE_4151 RPE_4151 RPE_4181 RPE_4181 RPE_4550 RPE_4550 RPE_4551 RPE_4551 RPE_4552 RPE_4552 RPE_4553 RPE_4553 RPE_4584 RPE_4584 RPE_4605 RPE_4605 RPE_4606 RPE_4606 RPE_4607 RPE_4607 RPE_4608 RPE_4608 RPE_4609 RPE_4609 RPE_4610 RPE_4610 RPE_4864 RPE_4864
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
kuKu domain protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. (325 aa)
RPE_0433KEGG: rpc:RPC_2948 hypothetical protein. (511 aa)
RPE_0513Hypothetical protein. (146 aa)
RPE_0515PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rpd:RPD_0477 pyridoxamine 5'-phosphate oxidase-related, FMN-binding. (162 aa)
RPE_0516KEGG: rpc:RPC_0066 hypothetical protein. (81 aa)
RPE_0668PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpa:RPA0915 putative NADPH quinone oxidoreductase. (332 aa)
RPE_0725PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: rpd:RPD_0793 ATP dependent DNA ligase. (587 aa)
RPE_0726KEGG: rpc:RPC_0750 putative mRNA 3-end processing factor. (346 aa)
RPE_0727Methyltransferase type 11; PFAM: Tetratricopeptide TPR_2 repeat protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_0749 tetratricopeptide TPR_2. (308 aa)
RPE_0730PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; KEGG: rpc:RPC_0747 DEAD/DEAH box helicase-like. (804 aa)
RPE_0731KEGG: rpc:RPC_0746 hypothetical protein. (237 aa)
RPE_0976PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_0956 methyltransferase type 12. (246 aa)
RPE_0977PFAM: Ferritin, Dps family protein; KEGG: rpa:RPA1274 possible Dps protein family starvation-inducible DNA-binding protein; Belongs to the Dps family. (173 aa)
RPE_1188PFAM: glycosyl transferase, group 1; KEGG: rpc:RPC_3209 glycosyl transferase, group 1. (355 aa)
RPE_1189PFAM: Amylo-alpha-1,6-glucosidase; KEGG: rpc:RPC_3211 amylo-alpha-1,6-glucosidase. (733 aa)
RPE_1190PFAM: major facilitator superfamily MFS_1; KEGG: rpc:RPC_3213 major facilitator superfamily MFS_1. (383 aa)
RPE_1278Alpha,alpha-trehalose-phosphate synthase (UDP-forming); PFAM: glycosyl transferase, group 1; glycosyl transferase, family 20; KEGG: rpb:RPB_1021 alpha,alpha-trehalose-phosphate synthase (UDP-forming). (737 aa)
RPE_1322PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: jan:Jann_0393 NAD-dependent epimerase/dehydratase. (216 aa)
RPE_1369PFAM: CsbD family protein; KEGG: rpc:RPC_1353 CsbD-like; Belongs to the UPF0337 (CsbD) family. (72 aa)
RPE_1385PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rpc:RPC_1368 NADH:flavin oxidoreductase/NADH oxidase. (366 aa)
RPE_1491PFAM: protein of unknown function DUF892; KEGG: rpc:RPC_1470 protein of unknown function DUF892. (168 aa)
RPE_1605PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: rpc:RPC_1580 GreA/GreB family elongation factor. (160 aa)
RPE_1728PFAM: CBS domain containing protein; transport-associated; KEGG: rpc:RPC_4051 putative signal-transduction protein with CBS domains. (242 aa)
RPE_1820PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: rpb:RPB_1733 glucose-methanol-choline oxidoreductase. (539 aa)
RPE_1821Amidohydrolase; KEGG: rpc:RPC_1729 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein. (390 aa)
RPE_1822PFAM: protein of unknown function DUF892; KEGG: rpc:RPC_1730 protein of unknown function DUF892. (165 aa)
RPE_1824PFAM: Radical SAM domain protein; KEGG: rpd:RPD_1900 radical SAM. (412 aa)
RPE_1825KEGG: rpb:RPB_3565 hypothetical protein. (260 aa)
RPE_1826KEGG: rpb:RPB_3564 hypothetical protein. (478 aa)
dnaE2DNA polymerase III, alpha subunit; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. (1153 aa)
RPE_2054PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rpc:RPC_2143 BFD-like (2Fe-2S)-binding region. (132 aa)
RPE_2055Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. (159 aa)
RPE_2074PFAM: PRC-barrel domain protein; KEGG: rpc:RPC_2167 PRC-barrel. (199 aa)
RPE_2081Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpc:RPC_4895 transcriptional regulator, LysR family. (297 aa)
RPE_2082PFAM: aldo/keto reductase; KEGG: rpc:RPC_4894 aldo/keto reductase. (331 aa)
RPE_2138PFAM: protein of unknown function DUF1328; KEGG: bja:bsl6560 hypothetical protein. (57 aa)
RPE_2270KEGG: rpc:RPC_1244 hypothetical protein. (145 aa)
RPE_2802KEGG: dar:Daro_1107 hypothetical protein. (606 aa)
RPE_2861PFAM: protein of unknown function UPF0118; KEGG: rpc:RPC_2700 protein of unknown function UPF0118. (377 aa)
RPE_2899KEGG: bja:bsr4721 hypothetical protein. (91 aa)
RPE_3012PFAM: Transglycosylase-associated protein; KEGG: mlo:msr2497 hypothetical protein. (100 aa)
RPE_3013PFAM: SOUL heme-binding protein; KEGG: ccr:CC2549 hypothetical protein. (225 aa)
RPE_3016KEGG: rpa:RPA2705 hypothetical protein. (59 aa)
RPE_3035PFAM: Cupin 2, conserved barrel domain protein; KEGG: rpc:RPC_2626 cupin 2, conserved barrel. (135 aa)
RPE_3049KEGG: rpc:RPC_2948 hypothetical protein. (624 aa)
RPE_3091PFAM: Ferritin, Dps family protein; KEGG: rpa:RPA2755 possible DNA-binding stress protein; Belongs to the Dps family. (161 aa)
RPE_3150PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: rpc:RPC_1972 NmrA-like. (224 aa)
RPE_3158KEGG: bja:blr8041 hypothetical protein. (91 aa)
RPE_3159Hypothetical protein. (110 aa)
RPE_3160PFAM: protein of unknown function DUF155; KEGG: nha:Nham_0703 protein of unknown function DUF155. (271 aa)
RPE_3266PFAM: Alcohol dehydrogenase, zinc-binding domain protein; KEGG: rpc:RPC_3068 alcohol dehydrogenase, zinc-binding. (344 aa)
RPE_3267KEGG: rpc:RPC_3069 hypothetical protein. (188 aa)
RPE_3269KEGG: rpc:RPC_3074 hypothetical protein. (82 aa)
RPE_3418KEGG: rpd:RPD_3071 hypothetical protein. (93 aa)
RPE_3420PFAM: aldo/keto reductase; KEGG: rpc:RPC_3339 2,5-didehydrogluconate reductase. (272 aa)
RPE_3639TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: rpc:RPC_4597 ribonuclease BN, putative. (370 aa)
RPE_3640PFAM: Transglycosylase-associated protein; KEGG: rpc:RPC_2982 transglycosylase-associated protein. (87 aa)
RPE_3641PFAM: alpha/beta hydrolase fold; KEGG: bja:bll3759 hypothetical protein. (358 aa)
RPE_3645Catalase; PFAM: manganese containing catalase; protein of unknown function DUF892; KEGG: bja:bll3758 Mn-containing catalase. (425 aa)
RPE_3648PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpb:RPB_1505 short-chain dehydrogenase/reductase SDR. (289 aa)
RPE_3649PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpc:RPC_1223 alcohol dehydrogenase, zinc-binding. (389 aa)
RPE_3664PFAM: protein of unknown function DUF892; KEGG: rpc:RPC_3623 protein of unknown function DUF892. (169 aa)
RPE_3665KEGG: rpc:RPC_3624 hypothetical protein. (187 aa)
RPE_3714PFAM: glycoside hydrolase 15-related; KEGG: rpc:RPC_3676 glycoside hydrolase 15-related. (598 aa)
RPE_3724PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: rpc:RPC_3685 ATP dependent DNA ligase. (907 aa)
ku-2Ku domain protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. (291 aa)
RPE_3864KEGG: rpc:RPC_3846 hypothetical protein. (254 aa)
RPE_3867KEGG: rpc:RPC_3851 hypothetical protein. (117 aa)
RPE_3903PFAM: CsbD family protein; KEGG: hch:HCH_05492 hypothetical protein; Belongs to the UPF0337 (CsbD) family. (91 aa)
RPE_3931PFAM: transport-associated; KEGG: rpc:RPC_3808 transport-associated. (216 aa)
RPE_3956KEGG: rpb:RPB_3885 hypothetical protein. (81 aa)
RPE_3957KEGG: rpc:RPC_3831 hypothetical protein. (167 aa)
RPE_4112PFAM: OsmC family protein; KEGG: rpc:RPC_3986 OsmC-like protein. (142 aa)
RPE_4151PFAM: aldo/keto reductase; KEGG: rpd:RPD_3895 aldo/keto reductase. (273 aa)
RPE_4181PFAM: aldo/keto reductase; KEGG: rpc:RPC_4128 aldo/keto reductase. (312 aa)
RPE_4550KEGG: rpc:RPC_4526 hypothetical protein. (158 aa)
RPE_4551PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rpc:RPC_4525 major facilitator superfamily MFS_1. (487 aa)
RPE_4552HAD-superfamily hydrolase, subfamily IIB; Removes the phosphate from trehalose 6-phosphate to produce free trehalose. (265 aa)
RPE_4553Alpha,alpha-trehalose-phosphate synthase (UDP-forming); Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-alpha-D- glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose- 6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor; Belongs to the glycosyltransferase 20 family. (505 aa)
RPE_4584PFAM: MscS Mechanosensitive ion channel; KEGG: bxe:Bxe_A2257 small-conductance mechanosensitive ion channel. (370 aa)
RPE_4605KEGG: rpc:RPC_4598 hypothetical protein. (257 aa)
RPE_4606PFAM: protein of unknown function DUF1469; KEGG: rpc:RPC_4599 protein of unknown function DUF1469. (118 aa)
RPE_4607KEGG: rpc:RPC_4600 late embryogenesis abundant protein. (204 aa)
RPE_4608PFAM: Late embryogenesis abundant protein; KEGG: rpc:RPC_4601 hypothetical protein. (412 aa)
RPE_4609PFAM: AMP-dependent synthetase and ligase; KEGG: rpb:RPB_1244 AMP-dependent synthetase and ligase. (503 aa)
RPE_4610Hypothetical protein. (106 aa)
RPE_4864PFAM: PRC-barrel domain protein; KEGG: rpc:RPC_4890 PRC-barrel. (121 aa)
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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