STRINGSTRING
RPE_1605 RPE_1605 RPE_2074 RPE_2074 RPE_2861 RPE_2861 RPE_4605 RPE_4605 RPE_4606 RPE_4606 RPE_4607 RPE_4607 RPE_4608 RPE_4608 RPE_4609 RPE_4609 RPE_4610 RPE_4610 RPE_4864 RPE_4864
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPE_1605PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: rpc:RPC_1580 GreA/GreB family elongation factor. (160 aa)
RPE_2074PFAM: PRC-barrel domain protein; KEGG: rpc:RPC_2167 PRC-barrel. (199 aa)
RPE_2861PFAM: protein of unknown function UPF0118; KEGG: rpc:RPC_2700 protein of unknown function UPF0118. (377 aa)
RPE_4605KEGG: rpc:RPC_4598 hypothetical protein. (257 aa)
RPE_4606PFAM: protein of unknown function DUF1469; KEGG: rpc:RPC_4599 protein of unknown function DUF1469. (118 aa)
RPE_4607KEGG: rpc:RPC_4600 late embryogenesis abundant protein. (204 aa)
RPE_4608PFAM: Late embryogenesis abundant protein; KEGG: rpc:RPC_4601 hypothetical protein. (412 aa)
RPE_4609PFAM: AMP-dependent synthetase and ligase; KEGG: rpb:RPB_1244 AMP-dependent synthetase and ligase. (503 aa)
RPE_4610Hypothetical protein. (106 aa)
RPE_4864PFAM: PRC-barrel domain protein; KEGG: rpc:RPC_4890 PRC-barrel. (121 aa)
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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