STRINGSTRING
RPE_0023 RPE_0023 RPE_0025 RPE_0025 RPE_0259 RPE_0259 RPE_0424 RPE_0424 RPE_1618 RPE_1618 RPE_1619 RPE_1619 RPE_1621 RPE_1621 RPE_1622 RPE_1622 RPE_1687 RPE_1687 RPE_2282 RPE_2282 RPE_4503 RPE_4503 RPE_4749 RPE_4749
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPE_0023PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpc:RPC_0020 short-chain dehydrogenase/reductase SDR. (298 aa)
RPE_0025PFAM: major facilitator superfamily MFS_1; KEGG: rpc:RPC_0022 major facilitator superfamily MFS_1. (460 aa)
RPE_0259PFAM: OsmC family protein; KEGG: bja:blr0920 hypothetical protein. (169 aa)
RPE_0424KEGG: rpc:RPC_4551 SecC-like protein. (131 aa)
RPE_1618KEGG: rpc:RPC_1597 hypothetical protein. (322 aa)
RPE_1619PFAM: protein of unknown function DUF323; KEGG: rpc:RPC_1598 protein of unknown function DUF323. (415 aa)
RPE_1621PFAM: Appr-1-p processing domain protein; KEGG: rpc:RPC_1600 Appr-1-p processing. (186 aa)
RPE_1622PFAM: beta-lactamase; KEGG: rpc:RPC_1601 beta-lactamase. (422 aa)
RPE_1687OsmC family protein; PFAM: alpha/beta hydrolase fold; OsmC family protein; KEGG: rpc:RPC_1673 OsmC-like protein. (408 aa)
RPE_2282TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein; KEGG: rpd:RPD_2224 YgfB and YecA. (201 aa)
RPE_4503PFAM: ADP-ribosylation/Crystallin J1; SMART: protein tyrosine phosphatase, catalytic region; KEGG: rpc:RPC_0422 ADP-ribosylation/crystallin J1. (493 aa)
RPE_4749KEGG: rpb:RPB_1020 hypothetical protein. (446 aa)
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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