STRINGSTRING
RPE_0473 RPE_0473 RPE_1846 RPE_1846 RPE_1851 RPE_1851 RPE_1852 RPE_1852 RPE_1853 RPE_1853 RPE_1854 RPE_1854 RPE_2539 RPE_2539 RPE_3212 RPE_3212 RPE_3213 RPE_3213 RPE_3214 RPE_3214 RPE_3215 RPE_3215 RPE_3216 RPE_3216 RPE_3217 RPE_3217 RPE_3218 RPE_3218 RPE_3220 RPE_3220 RPE_3221 RPE_3221 RPE_3222 RPE_3222 RPE_3223 RPE_3223 RPE_3224 RPE_3224
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPE_0473PFAM: AMP-dependent synthetase and ligase; KEGG: rpd:RPD_0483 AMP-dependent synthetase and ligase. (504 aa)
RPE_1846TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: rpc:RPC_1754 LAO/AO transport system ATPase. (328 aa)
RPE_1851Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system. (91 aa)
RPE_1852KEGG: rpc:RPC_1760 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; Methylmalonyl-CoA mutase-like; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein. (718 aa)
RPE_1853PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: rpc:RPC_1761 glutathione-dependent formaldehyde-activating, GFA. (154 aa)
RPE_1854PFAM: methylmalonyl-CoA mutase; KEGG: rpc:RPC_1762 methylmalonyl-CoA mutase. (623 aa)
RPE_2539methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rpa:RPA2934 hypothetical protein. (134 aa)
RPE_3212PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: eba:ebA2066 putative CoA-transferase protein, (family III); Belongs to the CoA-transferase III family. (396 aa)
RPE_3213Xanthine dehydrogenase, molybdenum binding subunit apoprotein; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: eba:ebA2064 large subunit of molybdenum enzyme. (794 aa)
RPE_3214PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: eba:ebA2063 small Fe/S-containing subunit of molybdenum enzyme. (156 aa)
RPE_3215PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: eba:ebA2062 medium FAD-binding subunit of molybdenum enzyme. (288 aa)
RPE_32165-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase B/oxoprolinase; KEGG: eba:ebA2053 hydantoin utilization protein B. (565 aa)
RPE_32175-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: eba:ebA2051 hydantoin utilization protein A. (709 aa)
RPE_3218PFAM: AMP-dependent synthetase and ligase; KEGG: eba:ebA2050 putative ADP-producing CoA ligase, similar to feruloyl-CoA synthetase. (511 aa)
RPE_3220Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: eba:ebA2047 transcriptional regulator, GntR family. (233 aa)
RPE_3221KEGG: bxe:Bxe_B2310 hypothetical protein. (266 aa)
RPE_3222PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: eba:ebA2055 putative acyl-CoA dehydrogenase. (378 aa)
RPE_3223TIGRFAM: Methylmalonyl-CoA mutase-like; PFAM: cobalamin B12-binding domain protein; KEGG: eba:ebD52 methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding). (131 aa)
RPE_3224KEGG: eba:ebA2060 methylmalonyl-CoA mutase subunit alpha; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase. (543 aa)
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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