STRINGSTRING
RPE_1024 RPE_1024 RPE_1025 RPE_1025 RPE_1026 RPE_1026 RPE_1027 RPE_1027 RPE_3261 RPE_3261
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPE_1024PFAM: Conjugal transfer TraD family protein; KEGG: rpd:RPD_3948 conjugal transfer TraD. (89 aa)
RPE_1025KEGG: rpd:RPD_3949 hypothetical protein. (108 aa)
RPE_1026PFAM: MobA/MobL protein; KEGG: rpd:RPD_2276 MobA/MobL protein. (1006 aa)
RPE_1027PFAM: Prophage CP4-57 regulatory; KEGG: rpc:RPC_4521 phage transcriptional regulator, AlpA. (71 aa)
RPE_3261PFAM: phage integrase family protein; KEGG: dar:Daro_2336 phage integrase; Belongs to the 'phage' integrase family. (449 aa)
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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