STRINGSTRING
RPE_1934 RPE_1934 RPE_0015 RPE_0015 RPE_0017 RPE_0017 RPE_0018 RPE_0018 RPE_0057 RPE_0057 RPE_0081 RPE_0081 katG katG ccmC ccmC RPE_0511 RPE_0511 RPE_0621 RPE_0621 RPE_0622 RPE_0622 RPE_0831 RPE_0831 RPE_0852 RPE_0852 RPE_0890 RPE_0890 RPE_0895 RPE_0895 RPE_0949 RPE_0949 RPE_1047 RPE_1047 RPE_1071 RPE_1071 RPE_1233 RPE_1233 RPE_1260 RPE_1260 RPE_1262 RPE_1262 RPE_1341 RPE_1341 RPE_1461 RPE_1461 RPE_1462 RPE_1462 RPE_1740 RPE_1740 RPE_1765 RPE_1765 ccmE ccmE RPE_2247 RPE_2247 RPE_2325 RPE_2325 RPE_3065 RPE_3065 RPE_3069 RPE_3069 RPE_3071 RPE_3071 RPE_3076 RPE_3076 RPE_3077 RPE_3077 RPE_3086 RPE_3086 RPE_3137 RPE_3137 RPE_3525 RPE_3525 RPE_3768 RPE_3768 RPE_3866 RPE_3866 RPE_4144 RPE_4144 RPE_4145 RPE_4145 RPE_4309 RPE_4309 RPE_4333 RPE_4333 RPE_4458 RPE_4458 RPE_4631 RPE_4631 RPE_4633 RPE_4633 RPE_4752 RPE_4752 RPE_4867 RPE_4867 apaG apaG
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPE_1934TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: rpc:RPC_1836 cytochrome c-type biogenesis protein CcmF. (660 aa)
RPE_0015Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (293 aa)
RPE_0017TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase, mono-heme subunit/FixO; KEGG: rpc:RPC_0014 cytochrome c oxidase, cbb3-type, subunit II. (244 aa)
RPE_0018TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase, subunit I; KEGG: rpc:RPC_0015 cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family. (548 aa)
RPE_0057PFAM: cytochrome P450; KEGG: rpb:RPB_0116 cytochrome P450. (468 aa)
RPE_0081PFAM: cytochrome P450; KEGG: bld:BLi00771 cytochrome P450 enzyme; RBL02770. (420 aa)
katGCatalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. (730 aa)
ccmCHeme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. (250 aa)
RPE_0511PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: rpb:RPB_0326 succinate dehydrogenase, cytochrome b subunit. (137 aa)
RPE_0621PFAM: cytochrome c oxidase, subunit I; KEGG: rpa:RPA1456 nitric-oxide reductase subunit B; Belongs to the heme-copper respiratory oxidase family. (448 aa)
RPE_0622KEGG: bja:blr3214 nitric oxide reductase subunit C. (150 aa)
RPE_0831TIGRFAM: cytochrome C family protein; KEGG: rpc:RPC_2960 cytochrome. (632 aa)
RPE_0852Hypothetical protein; KEGG: bja:blr6214 putative cytochrome c protein. (190 aa)
RPE_0890KEGG: rpc:RPC_4698 putative cytochrome c552 precursor. (120 aa)
RPE_0895PFAM: cytochrome P450; KEGG: rpc:RPC_4693 cytochrome P450. (458 aa)
RPE_0949Cytochrome c1; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (691 aa)
RPE_1047Cytochrome c553-like protein; KEGG: rpd:RPD_0618 cytochrome c, class I. (232 aa)
RPE_1071KEGG: rpc:RPC_1153 hypothetical protein. (153 aa)
RPE_1233TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: rpa:RPA0964 Ni/Fe-hydrogenase 1 B-type cytochrome subunit. (241 aa)
RPE_1260TIGRFAM: precorrin-3B synthase; PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: rpa:RPA3710 possible ferredoxin-nitrite reductase. (586 aa)
RPE_1262PFAM: globin; KEGG: rpb:RPB_1756 globin; Belongs to the globin family. (140 aa)
RPE_1341PFAM: cytochrome c, class I; KEGG: rpc:RPC_1307 cytochrome c, class I. (145 aa)
RPE_1461PFAM: cytochrome c, class II; KEGG: rpc:RPC_1440 cytochrome c, class II. (149 aa)
RPE_1462KEGG: rpc:RPC_1441 putative diheme cytochrome c-553. (365 aa)
RPE_1740PFAM: cytochrome c, class I; KEGG: rpc:RPC_4040 hypothetical protein. (117 aa)
RPE_1765PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: rpc:RPC_4013 nitrite and sulphite reductase 4Fe-4S region. (551 aa)
ccmECcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. (167 aa)
RPE_2247KEGG: rpc:RPC_3207 putative cytochrome c precursor. (104 aa)
RPE_2325PFAM: transglutaminase family protein cysteine peptidase, BTLCP; KEGG: rpc:RPC_3134 transglutaminase-like cysteine peptidase, BTLCP. (207 aa)
RPE_3065KEGG: rpa:RPA2069 hypothetical protein. (336 aa)
RPE_3069Hypothetical protein; KEGG: rpb:RPB_4365 cytochrome subunit of sulfide dehydrogenase. (123 aa)
RPE_3071Sulfur dehydrogenase subunit SoxD; PFAM: cytochrome c, class I; KEGG: rpa:RPA4463 possible cytochrome. (239 aa)
RPE_3076KEGG: rpd:RPD_4256 hypothetical protein. (273 aa)
RPE_3077KEGG: rpd:RPD_4257 hypothetical protein. (219 aa)
RPE_3086PFAM: cytochrome c, class II; KEGG: rpa:RPA2314 cytochrome c556. (146 aa)
RPE_3137Cytochrome c, class I; Electron acceptor for MDH. Acts in methanol oxidation. (220 aa)
RPE_3525PFAM: Pyrrolo-quinoline quinone; KEGG: rpb:RPB_2355 pyrrolo-quinoline quinone. (726 aa)
RPE_3768PFAM: cytochrome c, class I; KEGG: rpc:RPC_3730 cytochrome c, class I. (184 aa)
RPE_3866PFAM: cytochrome c oxidase, subunit I; KEGG: rpc:RPC_3850 cytochrome-c oxidase; Belongs to the heme-copper respiratory oxidase family. (841 aa)
RPE_4144PFAM: NapC/NirT cytochrome c domain protein; KEGG: rpc:RPC_1749 NapC/NirT cytochrome c-like; Belongs to the TorC/TorY family. (374 aa)
RPE_4145PFAM: Di-haem cytochrome c peroxidase; KEGG: rpc:RPC_1205 cytochrome-c peroxidase. (331 aa)
RPE_4309PFAM: cytochrome P450; KEGG: rpa:RPA1613 putative cytochrome P-450. (421 aa)
RPE_4333PFAM: Animal heme peroxidase; KEGG: gvi:glr3599 hypothetical protein. (515 aa)
RPE_4458KEGG: nha:Nham_2708 hypothetical protein. (610 aa)
RPE_4631KEGG: bja:bll5042 hypothetical protein; Belongs to the cytochrome P450 family. (426 aa)
RPE_4633KEGG: bja:bll5040 putative iron-dependent peroxidase. (486 aa)
RPE_4752Cytochrome-c oxidase; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (546 aa)
RPE_4867KEGG: rpd:RPD_2376 cytochrome c family protein. (193 aa)
apaGPFAM: ApaG domain protein; KEGG: rpc:RPC_4913 ApaG. (163 aa)
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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