STRINGSTRING
RPE_0648 RPE_0648 RPE_0764 RPE_0764 RPE_0851 RPE_0851 flgI flgI flgI-2 flgI-2 RPE_2793 RPE_2793 RPE_3139 RPE_3139 RPE_3295 RPE_3295 RPE_3525 RPE_3525 RPE_3766 RPE_3766 RPE_3767 RPE_3767 RPE_4109 RPE_4109 RPE_4189 RPE_4189 cpoB cpoB RPE_0091 RPE_0091 RPE_0315 RPE_0315
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPE_0648PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rpc:RPC_0813 hypothetical protein. (333 aa)
RPE_0764TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: rpa:RPA4717 molybdate transport system substrate-binding protein. (257 aa)
RPE_0851PFAM: Pyrrolo-quinoline quinone; KEGG: bja:blr6213 methanol dehydrogenase large subunit-like protein. (603 aa)
flgIFlagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (367 aa)
flgI-2Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (378 aa)
RPE_2793PFAM: extracellular solute-binding protein, family 5; KEGG: rpc:RPC_2613 extracellular solute-binding protein, family 5. (617 aa)
RPE_3139PFAM: Pyrrolo-quinoline quinone; KEGG: rpc:RPC_1907 pyrrolo-quinoline quinone. (624 aa)
RPE_3295KEGG: rpc:RPC_2310 hypothetical protein. (305 aa)
RPE_3525PFAM: Pyrrolo-quinoline quinone; KEGG: rpb:RPB_2355 pyrrolo-quinoline quinone. (726 aa)
RPE_3766PFAM: extracellular solute-binding protein, family 5; KEGG: rpc:RPC_3728 extracellular solute-binding protein, family 5. (629 aa)
RPE_3767Extracellular solute-binding protein; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: rpc:RPC_3729 extracellular solute-binding protein, family 5. (632 aa)
RPE_4109PFAM: protein of unknown function DUF1036; KEGG: rpc:RPC_3981 protein of unknown function DUF1036. (196 aa)
RPE_4189PFAM: beta-lactamase domain protein; KEGG: rpb:RPB_4145 beta-lactamase-like. (662 aa)
cpoBTetratricopeptide TPR_2 repeat protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family. (336 aa)
RPE_0091Murein endopeptidase. Metallo peptidase. MEROPS family M74; PFAM: peptidase U6, penicillin-insensitive murein endopeptidase; KEGG: rpc:RPC_0581 peptidase U6, penicillin-insensitive murein endopeptidase. (316 aa)
RPE_0315TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: rpc:RPC_0209 periplasmic protein thiol. (198 aa)
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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