STRINGSTRING
RPE_4539 RPE_4539 RPE_4568 RPE_4568 RPE_4607 RPE_4607 RPE_4647 RPE_4647 RPE_1207 RPE_1207 RPE_0514 RPE_0514 RPE_0591 RPE_0591 RPE_0948 RPE_0948 RPE_4649 RPE_4649 RPE_1476 RPE_1476 RPE_1620 RPE_1620 RPE_1655 RPE_1655 RPE_1713 RPE_1713 RPE_1715 RPE_1715 RPE_2054 RPE_2054 bioB bioB RPE_2261 RPE_2261 RPE_2525 RPE_2525 RPE_2529 RPE_2529 RPE_2629 RPE_2629 RPE_2962 RPE_2962 RPE_2968 RPE_2968 RPE_3191 RPE_3191 RPE_3214 RPE_3214 RPE_3688 RPE_3688 RPE_3977 RPE_3977 ilvD ilvD RPE_3604 RPE_3604 RPE_4523 RPE_4523
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPE_4539TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rpc:RPC_4470 HesB/YadR/YfhF; Belongs to the HesB/IscA family. (117 aa)
RPE_4568PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rpc:RPC_4528 (2Fe-2S)-binding. (156 aa)
RPE_4607KEGG: rpc:RPC_4600 late embryogenesis abundant protein. (204 aa)
RPE_4647TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rpc:RPC_4645 formate dehydrogenase, alpha subunit. (948 aa)
RPE_1207Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (175 aa)
RPE_0514KEGG: rpa:RPA0216 succinate dehydrogenase iron-sulfur protein subunit; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (260 aa)
RPE_05914-hydroxybenzoyl-CoA reductase gamma subunit; PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rpd:RPD_1525 (2Fe-2S)-binding. (163 aa)
RPE_0948Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (175 aa)
RPE_4649PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: rpc:RPC_4647 NADH dehydrogenase (ubiquinone), 24 kDa subunit. (160 aa)
RPE_1476PFAM: ferredoxin; KEGG: rpc:RPC_1457 ferredoxin. (106 aa)
RPE_1620TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: rpd:RPD_1760 glutaredoxin-related protein; Belongs to the glutaredoxin family. Monothiol subfamily. (110 aa)
RPE_1655PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rpc:RPC_1631 (2Fe-2S)-binding. (161 aa)
RPE_1713PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: rpc:RPC_4068 NADH dehydrogenase (ubiquinone), 24 kDa subunit. (157 aa)
RPE_1715TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: ferredoxin; molybdopterin oxidoreductase Fe4S4 region; KEGG: rpc:RPC_4066 NADH-quinone oxidoreductase, chain G. (871 aa)
RPE_2054PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rpc:RPC_2143 BFD-like (2Fe-2S)-binding region. (132 aa)
bioBBiotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. (338 aa)
RPE_2261Dihydroxyacid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: rpd:RPD_2216 dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. (568 aa)
RPE_2525KEGG: rpc:RPC_2406 NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit. (249 aa)
RPE_2529NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (691 aa)
RPE_2629TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rpd:RPD_2797 HesB/YadR/YfhF; Belongs to the HesB/IscA family. (109 aa)
RPE_2962TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: nwi:Nwi_1659 HesB/YadR/YfhF; Belongs to the HesB/IscA family. (133 aa)
RPE_2968Iron-regulated ABC transporter membrane component SufB; TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: rpc:RPC_2841 FeS assembly protein SufB. (508 aa)
RPE_3191PFAM: Radical SAM domain protein; KEGG: rpa:RPA2614 hypothetical protein. (477 aa)
RPE_3214PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: eba:ebA2063 small Fe/S-containing subunit of molybdenum enzyme. (156 aa)
RPE_3688PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: rpc:RPC_3648 dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. (599 aa)
RPE_3977Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (178 aa)
ilvDKEGG: bmb:BruAb1_0096 IlvD, dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family. (614 aa)
RPE_3604PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rpb:RPB_2280 (2Fe-2S)-binding protein. (154 aa)
RPE_4523TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rpa:RPA4610 protein of unknown function, HesB/YadR/YfhF; Belongs to the HesB/IscA family. (106 aa)
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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